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TranscriptomicsTranscription profiling of Saccharomyces cerevisiae for different levels of glucose
To characterize gene expression that is dependent on the strength of calorie restriction (CR), we obtained transcriptome at different levels of glucose, which is a major energy and carbon source for budding yeast. To faithfully mimic mammalian CR in yeast culture, we reconstituted and grew seeding y...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-26 | E-GEOD-9217 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Capsicum fruit ripening process
Pepper fruits at four different developmental stages were collected: early fruit [EF; 1 cm long; 7 days after pollination (dap)], mature green fruit (MG; 6-7 cm length; 20 dap), breaking or turning red fruit (BR; fruit are partially red; 35 dap), and red ripe fruit (RR; fully red; 40 dap). Tomato fr...
ORGANISM(S): Capsicum annuum 
2005-03-01 | E-MEXP-260 | biostudies-arrayexpress
MetabolomicsThe Green Tea Modulates Large Intestinal Microbiome and Exo/Endogenous Metabolome altered through Chronic UVB-exposure (Endogenous assays)
The attenuating effects of green tea supplements (GTS) against the ultraviolet (UV) radiation induced skin damages are distinguished. However, the concomitant effects of GTS on the large intestinal microbiomes and associated metabolomes are largely unclear. Herein, we performed an integrated microbi...
2018-09-14 | MTBLS527 | MetaboLights
TranscriptomicsGene expression profile from short-term caloric restriction in mouse adipose tissue
To provide a robust understanding of a transcriptomic change by short-term CR at body fat of mice, we applied three serial strengths of CR to mice including 15%, 30%, and 45% reduction of carbon source. Using Affymetrix mouse 1.0 ST array platform, we obtained and analyzed the transcriptome data for...
ORGANISM(S): Mus musculus 
2015-12-31 | E-GEOD-60596 | biostudies-arrayexpress
ProteomicsDistinguishing N-Terminal Methylation from Near-isobaric Modifications by Statistical Analysis of Mass Error Distributions of Fragment Ions
alpha-N-terminal methylation is an understudied post-translational modification with presumed functions involving protein-protein and/or protein-DNA interaction. The covalent addition of mono-, di-, trimethyl groups to free alpha-amino group has proven to be difficult to profile globally by mass spe...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-11-14 | MSV000096415 | MassIVE
TranscriptomicsExpression profiles from HEK293 cells by overexpression of TRPM7 channel
The functional activity of TRPM7 is essential for cell viability and growth, and its expression is up-regulated in certain pathological conditions. In order to assess the effects of TRPM7 activity on cellular gene expression, inducible HEK293 cell-lines harboring the wild-type mouse TRPM7 and a muta...
ORGANISM(S): Homo sapiens 
2011-07-22 | E-GEOD-23102 | biostudies-arrayexpress
TranscriptomicsTime-dependent expressed markers and their characterization for premature senescence induced by ionizing radiation in MCF7
Recently, senescence has been suggested as a defense mechanism to block sporadic induction of cancer cells. Radiation treatment induces proliferating cancer cells to turn into non-proliferating senescent cells in vitro. To characterize transcriptional reprogramming after radiation treatment, we meas...
ORGANISM(S): Homo sapiens 
2010-06-08 | E-GEOD-21748 | biostudies-arrayexpress
TranscriptomicsComparison between liver transcriptomes of Korean native pig and Yorkshire
There are clear phenotypic differences between Korean native pig (KNP) and Yorkshire (YS) breeds because of different interests for selection. YS has been artificially selected by industrial interests such as a growth rate and a lean meat production, however, KNP has been maintained as a regional br...
ORGANISM(S): Sus scrofa 
2010-12-31 | E-GEOD-21408 | biostudies-arrayexpress
ProteomicsFenbendazole Met ID_in vitro_cross-species_FBMN
Fenbendazole Met ID by an integrative approach using feature-based molecular networking of cross-species in vitro liver microsomal and hepatocellular incubation.
ORGANISM(S): Canis Lupus Familiaris (ncbitaxon:9615) Macaca Fascicularis (ncbitaxon:9541) Cd1 Mouse Homo Sapiens (ncbitaxon:9606) 
2024-08-08 | MSV000095554 | MassIVE
TranscriptomicsExpression data from adult Shh-responding astroglia cells in mice
Sonic hedgehog (Shh) signals via Gli transcription factors to promote maintenance and proliferation of neural stem cells in the adult mouse forebrain. We have analyzed the gene expression pattern in neurogenic Shh-responding astroglia (= neural stem cells ) in the subventicular zone of the lateral ...
ORGANISM(S): Mus musculus 
2013-09-18 | E-GEOD-50950 | biostudies-arrayexpress
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