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TranscriptomicsDynamic changes of DNA methylome and hydroxymethylome during neural differentiation of hES cells (Methylation BeadChip)
DNA methylation and hydroxymethylation have been implicated in normal development and differentiation, but our knowledge about the genome-wide distribution of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) during cellular differentiation remains limited. Using in vitro model system of gra...
ORGANISM(S): Homo sapiens 
2013-11-04 | E-GEOD-38216 | biostudies-arrayexpress
ProteomicsnextPP for chromosome-based proteomic research using neXtProt and GENCODE databases
In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-07-25 | MSV000081385 | MassIVE
TranscriptomicsTime course bulk RNA-seq of Troy+ chief cells in the mouse stomach corpus epithelium after injury
The purpose of this experiment is to assess temporal transcriptomic change in Troy+ chief cells upon injury in the stomach corpus in mice. Troy+-eGFP cells were sorted at each time point after stomach injury by DMP777 treatment.
ORGANISM(S): Mus musculus 
2022-05-05 | E-MTAB-10373 | biostudies-arrayexpress
TranscriptomicsSingle cell RNA-seq of Gif lineage cells in homeostasis and upon injury
The purpose of this experiment is to assess and characterize injury response of the gastric chief cells in trancriptomic level. Gif lineage cells (TdTom- GFP+) from Gif-rtTA; TetO-Cre; Rosa-mTmG mice line after Dox administration were isolated from the mouse gastric corpus without injury or at 2d af...
ORGANISM(S): Mus musculus 
2022-05-05 | E-MTAB-11587 | biostudies-arrayexpress
TranscriptomicsThe fine-scale and complex architecture of human copy number variation
Despite considerable excitement over the potential functional significance of copy number variants (CNVs), we still lack knowledge of the fine-scale architecture of the large majority of CNV regions in the human genome. In this study, we used a high-resolution array-based comparative genomic hybridi...
ORGANISM(S): Homo sapiens 
2008-01-23 | E-GEOD-9831 | biostudies-arrayexpress
UnknownMolecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.
Not available
S-EPMC5113708 | biostudies-literature
ProteomicsMm_iPS_iTRAQ
Proteome dynamics of mouse embryonic fibroblast reprograming into iPS cells
ORGANISM(S): Mus Musculus 
2014-12-31 | PAe005212 | PeptideAtlas
UnknownGenome-wide association study identifies 30 loci associated with bipolar disorder.
Not available
S-EPMC6956732 | biostudies-literature
UnknownPrevalence, associated factors and outcomes of pressure injuries in adult intensive care unit patients: the DecubICUs study.
Not available
S-EPMC7880913 | biostudies-literature
UnknownGenome-wide association analysis identifies six new loci associated with forced vital capacity.
Not available
S-EPMC4140093 | biostudies-literature
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