Lee Scott S - OmicsDI

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Unknown (1191)
Genomics (63)
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Organisms

Homo sapiens (71)
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Mus musculus (3)
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Repository

EGA (57)
biostudies-arrayexpress (40)
pride (3)
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Tissue

Melanocyte (2)

Disease

Melanoma (2)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Scanning hardware (1)
Illumina HiSeq 2500 (1)
Orbitrap Ascend (1)
Q Exactive (1)
Q Exactive HF (1)
GCMS-QP2010 Plus (Shimadzu) (1)

Publication Date

2010 (9)
2014 (7)
2012 (6)
2007 (5)
2013 (4)
2011 (3)
2009 (2)
2025 (2)
2016 (2)
2024 (1)
2015 (1)
2006 (1)
2005 (1)
2021 (1)
2018 (1)

CHEBI ID

CHEBI:138264 (1)
CHEBI:78736 (1)
CHEBI:12936 (1)
CHEBI:17317 (1)
CHEBI:10642 (1)
CHEBI:87978 (1)
CHEBI:17057 (1)
CHEBI:17992 (1)
CHEBI:32528 (1)
CHEBI:37455 (1)
CHEBI:78679 (1)
CHEBI:17634 (1)
CHEBI:17822 (1)
CHEBI:18237 (1)
CHEBI:22660 (1)
CHEBI:22652 (1)
CHEBI:18257 (1)
CHEBI:29864 (1)
CHEBI:16708 (1)
CHEBI:16977 (1)
CHEBI:16988 (1)
CHEBI:4139 (1)
CHEBI:17924 (1)
CHEBI:32927 (1)
CHEBI:32943 (1)
CHEBI:36020 (1)
CHEBI:15428 (1)
CHEBI:46050 (1)
CHEBI:17148 (1)
CHEBI:78697 (1)

Metabolite Name

D-sorbitol-1-13C m/z_320 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_319 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_206 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_205 (alt. m/z quant.) (1)
D-sorbitol 13C6 m/z_322 (alt. m/z quant.) (1)
Saturated_Guanine manual (1)
Unknown_17.908, 1332, m/z 247 (1)
5-Hydroxyindole-3-acetic acid, 3 TMS, 35.49, 2212 (1)
Unkown_32.762, 2047, m/z 132 (1)
Mannitol, 6 TMS, 30.6, 1915 (alt. m/z quant. high dynamic range) (1)
D-(+)-Glucose, 5 TMS, MEOX, 30.38, 1902 (alt. m/z quant. high dynamic range) (1)
D-(+)-Galactose, 5 TMS, MEOX, 29.94, 1880 (alt. m/z quant. high dynamic range) (1)
Glutamic acid, 3 TMS, 24.79, 1623 (alt. m/z quant. high dynamic range) (1)
Serotonin, x TMS, 39.11, 2470 (alt. m/z quant. high dynamic range) (1)
D-(+)-Turanose, 7 TMS, 42.29, 2702 (1)
L-Lysine, 3 TMS, 26.54, 1712 (1)
L-Leucine, 2 TMS, 16.74, 1274 (1)
L-Leucine, 1 TMS, 13.8, 1155 (1)
Serine, 2 TMS, 16.43, 1260 (1)
Unknown_38.398, 2421, m/z 387 (1)
Benzoic acid, 1 TMS, 16.26, 1254 (1)
Unknown_53.63, 3702, m/z 311 (1)
Unknown_51.603, 3505, m/z283 (1)
Unknown_46.866, 3064, m/z 169 (1)
Unknown_48.018, 3163, m/z 329 (1)
Unknown_46.848, 3063, m/z 169 (1)
Unknown_44.338, 2848, m/z 103 (1)
Unknown_44.010, 2820, m/z 169 (1)
Unknown_44.002, 2820, m/z 131 (1)
Unknown_43.658, 2792, m/z 126 (1)

Study type

Transcription profiling by array (22)
ChIP-seq (6)
ChIP-chip by tiling array (3)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA (2)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Other (1)

Release Date

2021 (131)
2022 (130)
2024 (129)
2023 (118)
2019 (89)
2020 (81)
2025 (79)
2018 (75)
2015 (71)
2017 (63)
2014 (55)
2016 (55)
2013 (37)
2012 (31)
2011 (28)
2010 (16)
2026 (14)
2009 (12)
2008 (10)
2007 (5)
2006 (1)
2005 (1)

Lab affiliation

Department of Chemistry and Biochemistry University of Colorado, Boulder Boulder, CO 80309 (2)
Department of Structural Biology, St. Jude Children’s Research Hospital, Memphis, TN 38105, USA Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany (1)

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C. elegans as a model for inter-individual variation in metabolism

Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism

ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239)

2021-07-13 | MSV000087810 | MassIVE

Gene expression profiles of murine granule neuron precursors and medulloblastoma

Sonic hedgehog (Shh) signals via Gli transcription factors to stimulate proliferation of granule neuron precursor cells (GNPs) in the cerebellum. Deregulation of Shh target genes often results in unrestrained GNP proliferation and eventually medulloblastoma (MB), the most common pediatric brain mali...

ORGANISM(S): Mus musculus

2010-06-16 | E-GEOD-17702 | biostudies-arrayexpress

Increased inflammatory low-density neutrophils in severe obesity and effect of bariatric surgery: Results from case-control and prospective cohort studies.

Not available

S-EPMC8897585 | biostudies-literature

Role of nicotine dependence on the relationship between variants in the nicotinic receptor genes and risk of lung adenocarcinoma.

Not available

S-EPMC4169410 | biostudies-literature

Anti-tumor efficacy of plasmid encoding emm55 in a murine melanoma model.

Not available

S-EPMC7680263 | biostudies-literature

Initial Clinical Outcome With Bilateral, Dual-Target Deep Brain Stimulation Trial in Parkinson Disease Using Summit RC + S.