Leonard S S - OmicsDI

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Unknown (2205)
Transcriptomics (92)
Genomics (71)
Proteomics (71)
Metabolomics (4)

Organisms

Homo sapiens (152)
Mus musculus (34)
Caenorhabditis elegans (7)
Danio rerio (5)
Rattus norvegicus (5)
Campylobacter jejuni (4)
Apis mellifera (4)
Zea mays (3)
Drosophila melanogaster (3)
Escherichia coli (2)
Spodoptera frugiperda (2)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Xenopus laevis (1)
Macaca fascicularis (1)
Hordeum vulgare (1)
Glycine max (1)
Equus caballus (1)
Flavobacterium johnsoniae (1)
Rousettus aegyptiacus (1)
Saccharomyces cerevisiae (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 5579 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. A130 (1)
Sicarius thomisoides (1)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Verticillium dahliae JR2 (1)

Organisms

Bradyrhizobium sp. SUTN9-2 (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (102)
EGA (59)
pride (58)
MassIVE (11)
MetaboLights (4)
jPOST (2)
ENA (2)

Tissue

Cell culture (13)
Blood plasma (3)
Liver (3)
Aortic valve (2)
Colon (2)
Valve cell (2)
Adipocyte cell line (1)
Blood cell (1)
Blood serum (1)
Breast cancer cell line (1)
Epithelial cell (1)
Macrophage (1)
Natural killer cell (1)
Parenchyma (1)
Peripheral blood lymphocyte (1)
Permanent cell line cell (1)
Preadipocyte (1)
Primary cell (1)
Skin (1)
Small intestine (1)
Whole body (1)

Disease

Cardiovascular system disease (2)
Normal (1)
Aortic valve stenosis (1)
Chronic inflammation (1)
Crohn's disease (1)
Obesity (1)
Skin cancer (1)
Spinal cord (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (58)
Shotgun proteomics (31)
Bottom-up proteomics (20)
Data-dependent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
Data-independent acquisition (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina (various), Illumina (Various) (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 4000 (3)
Bruker Impact II Q-TOF (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Affymetrix Gene Titan (1)
Gene Titan (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Agilent 1200 series (1)
Agilent Technologies (1)
Bruker Daltonics instrument model (1)
Impact II (1)
LC/MSD Ultra Trap System XCT6330 (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
TimsTOF Pro 2 (1)
Exactive (Thermo Scientific) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2012 (22)
2024 (15)
2023 (14)
2010 (14)
2026 (12)
2016 (11)
2014 (10)
2011 (10)
2025 (10)
2013 (9)
2009 (7)
2019 (6)
2015 (6)
2022 (6)
2021 (5)
2007 (4)
2020 (4)
2005 (3)
2018 (3)
2006 (2)
2017 (2)
2008 (1)
2004 (1)

CHEBI ID

CHEBI:17295 (3)
CHEBI:10072 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15603 (2)
CHEBI:15698 (2)
CHEBI:15729 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15999 (2)
CHEBI:16015 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16283 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16349 (2)
CHEBI:16411 (2)
CHEBI:16414 (2)
CHEBI:16450 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16675 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16742 (2)
CHEBI:16750 (2)
CHEBI:16797 (2)

Metabolite Name

Adenosine diphosphate (2)
Adenosine monophosphate (2)
Biocytin (2)
Citric acid (2)
D-Galactose (2)
Dodecanedioic acid (2)
Guanine (2)
Guanosine (2)
Histamine (2)
Hypoxanthine (2)
Inosine (2)
L-Cystathionine (2)
L-Serine (2)
Mannose 1-phosphate (2)
NADH (2)
Taurine (2)
Uridine (2)
Xanthosine (2)
(+/-)-2-Hydroxy-4-(methylthio)butanoic acid (1)
(+/-)-3-Hydroxynonanoic acid (1)
(+/-)-Tryptophan (1)
(11Z,14Z)-3-Icosa-11,14-dienoylcarnitine (1)
(12E)-9-Hydroxyoctadecenoylcarnitine (1)
(1R,2R,4R,5S)-(+)-p-Menthane-2,5-diol (1)
(2-oxo-2,3-dihydro-1h-indol-3-yl)acetic acid (1)
(2R,3S)-2,3-dimethylmalate (1)
(2R,3S)-2-Octyl-3-pentyloxane (1)
(2S)-2-Hydroxyhexadecanoylcarnitine (1)
(2S)-2-[[(2R,3S,4R,5R)-5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methylamino]-4-sulfanylbutanoic acid (1)
(4,6-Dimethylpyrimidin-5-yl)-[4-[4-[2-[2-methoxy-4-(trifluoromethyl)phenyl]ethyl]-3-methylpiperazin-1-yl]-4-methylpiperidin-1-yl]methanone (1)

First Public Date

2024 (1)
2014 (1)

Study type

Transcription profiling by array (55)
ChIP-seq (9)
Methylation profiling by array (9)
Unknown experiment type (6)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA (6)
RNA-seq of non coding RNA (3)
Genotyping by array (2)
RNA-seq of coding RNA from single cells (2)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Capture-C (1)
DNA-seq (1)

Release Date

2022 (274)
2021 (256)
2025 (245)
2024 (240)
2023 (222)
2020 (188)
2019 (158)
2018 (99)
2016 (97)
2017 (88)
2015 (83)
2014 (71)
2012 (54)
2011 (53)
2013 (48)
2026 (34)
2010 (28)
2009 (26)
2008 (16)
2007 (8)
2005 (6)
2006 (5)
2000 (3)
2004 (2)
1998 (1)
1997 (1)

Lab affiliation

Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (9)
University of Victoria (7)
Medical University of Vienna, Max Perutz Labs, Dr. Bohr-Gasse 9, 1030 Vienna (4)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (3)
Brigham and Women's Hospital, Harvard Medical School (2)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria (2)
Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna (2)
AstraZeneca (1)
Biochemistry and Molecular Biologoy, University of British Columnbia, Canada (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia (1)
Brigham and Women's Hospital and Harvard Medical School (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
Centre for Proteome Research, Department of Biochemistry & Systems Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool; Liverpool, UK (1)
Department of Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Department of Biochemistry and Molecular Biology, Center for High-throughput Biology, UBC, Vancouver, Canada (1)
Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada (1)
Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada. Proteomics and Metabolomics Core Facility, Life Sciences Institute, University of British Columbia, Vancouver, BC, V6T 2A1, Canada. (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Department of Biochemistry and System Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Germany (1)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria Department of Medical Biochemistry, Medical University of Vienna, 1090 Vienna, Austria (1)
Department of Structural and Computational Biology, Max Perutz Labs, Medical University, Vienna Biocenter, Vienna, Austria (1)
Developmental and Cell Biology University of California, Irvine Irvine, California, USA (1)
Institute for Cell Engineering, Sidney Kimmel Comprehensive Cancer Center, Department of Biological Chemistry, McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University School of Medicine, USA (1)
Laboratory of Cell Biology, National Cancer Institute, NIH United States (1)
Leonard P Ullmann Chair in Metabolic Systems Biology, The Charles Perkins Centre School of Life and Environmental Sciences and Sydney Medical School D17 - Charles Perkins Centre | The University of Sydney | NSW | 2006 (1)
Medical University of Vienna, Max Perutz Labs, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (1)

Tags

xref:PubMed:26582551 (1)
xref:PubMed:23034122 (1)
xref:PubMed:25969563 (1)

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Identification of the epithelial receptor for measles virus

Measles (MV) is an aerosol-transmitted virus that affects more than 10 million children each year and accounts for approximately 120,000 deaths. While it was long believed to replicate in the respiratory epithelium before disseminating, it was recently shown to initially infect macrophages and dendr...

ORGANISM(S): Homo sapiens

2011-11-02 | E-GEOD-32155 | biostudies-arrayexpress

S mansoni infection B cell comparison

The helminth Schistosoma Mansoni is known to generate a regulatory B cell population that can suppress in multiple murine experimental models. Microarray comparison allows for a greater understanding as to how these cells are generated and their implications in immune regulation.

ORGANISM(S): Mus musculus

2014-03-28 | E-MTAB-2100 | biostudies-arrayexpress

One-shot identification of SARS-CoV-2 S RBD escape mutants using yeast screening.

Not available

S-EPMC8352667 | biostudies-literature

Effects of the glyphosate-based herbicide roundup on C. elegans and S. cerevisiae mortality, reproduction, and transcription fidelity.

Not available

S-EPMC11321929 | biostudies-literature

Keap1 controls protein S-nitrosation and apoptosis-senescence switch in endothelial cells.

Not available

S-EPMC6731384 | biostudies-literature

An essential role for an Fe-S cluster protein in the cytochrome c oxidase complex of Toxoplasma parasites.

Not available

S-EPMC10263302 | biostudies-literature

Blood gene expression profile of control and crystalline silica exposed rats

The present research aimed to investigate peripheral blood gene expression profiling as a minimally invasive surrogate approach to study silica-induced pulmonary toxicity. Rats were exposed to crystalline silica by inhalation (15 mg/m3, 6 hours/day, 5 days). Pulmonary damage and blood gene expressio...

ORGANISM(S): Rattus norvegicus

2011-12-02 | E-GEOD-27023 | biostudies-arrayexpress

Virulence factors produced by Staphylococcus aureus biofilms have a moonlighting function contributing to biofilm integrity

We comprehensively profiled intracellular and ECM proteomes of S. aureus flow biofilms and complemented these data by metabolic footprint analysis and phenotypic assays. We show that S. aureus biofilms produce high amounts of secreted, moonlighting virulence factors stabilizing the ECM. Mechanistica...

ORGANISM(S): Staphylococcus aureus subsp. aureus NCTC 8325

2019-03-13 | PXD011157 | Pride

Incidence of Severe COVID-19 Illness Following Vaccination and Booster With BNT162b2, mRNA-1273, and Ad26.COV2.S Vaccines.

Not available

S-EPMC9513709 | biostudies-literature

Escitalopram for agitation in Alzheimer's disease (S-CitAD): Methods and design of an investigator-initiated, randomized, controlled, multicenter clinical trial.

Not available

S-EPMC6889953 | biostudies-literature

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