Li Chi C - OmicsDI

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Unknown (1558)
Transcriptomics (716)
Genomics (273)
Proteomics (49)
Metabolomics (12)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (404)
Mus musculus (296)
Drosophila melanogaster (58)
Arabidopsis thaliana (33)
Rattus norvegicus (33)
Saccharomyces cerevisiae (26)
Danio rerio (14)
Gallus gallus (12)
Sus scrofa (10)
Zea mays (8)
Caenorhabditis elegans (8)
Candida albicans (7)
Vitis vinifera (6)
Schizosaccharomyces pombe (5)
Macaca mulatta (4)
Citrus limonia (3)
Oryza sativa (3)
Escherichia coli (3)
Mammalia (2)
groundwater metagenome (2)
mouse gut metagenome (2)
Hordeum vulgare (2)
Oryctolagus cuniculus (2)
Heterocephalus glaber (2)
Solanum lycopersicum (2)
Triticum aestivum (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Gastrodia elata (1)
Oreochromis niloticus (1)
Camellia sinensis (1)

Repository

biostudies-arrayexpress (982)
pride (24)
iProX (19)
MetaboLights (12)
EGA (10)
MassIVE (4)
BioModels (2)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (10)
Blood plasma (3)
T cell (3)
Lymph node (2)
Dendritic cell (2)
Testis (2)
Whole body (2)
Epithelial cell (2)
Microglial cell activation (1)
Endosperm (1)
Anther (1)
Venom (1)
Placenta (1)
Embryonic stem cell (1)
Cerebrospinal fluid (1)
Urine (1)
Cotyledon (1)
Bone marrow (1)
Heart (1)
Brain (1)
Embryo (1)
Spleen (1)
Rosette (1)
Primary cell (1)
Erythrocyte (1)
Hepatocyte (1)
Lung (1)
Kidney (1)
B cell (1)
Saliva (1)

Disease

Normal (6)
Breast cancer (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Ovarian carcinoma (1)
Burn injury (1)
Hepatomegaly (1)
B. dendrobatidis infection (1)
Systemic sclerosis with diffuse scleroderma (1)
Cancer (1)
Gastric cancer (1)
Adenocarcinoma (1)
Retinal degeneration (1)
Systemic lupus erythematosus (1)
Disease free (1)

Technology Type

Mass Spectrometry (24)
Shotgun proteomics (16)
Mass spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (2)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (17)
DNBSEQ-T7 (14)
Illumina HiSeq 2500 (12)
Illumina HiSeq 2000 (12)
Illumina HiSeq 4000 (12)
BGISEQ-500 (8)
NextSeq 500 (6)
Illumina Genome Analyzer IIx (4)
NextSeq 550 (3)
Bio-Rad CFX96 Real-time System (2)
BD LSRFortessa (2)
NextSeq 2000 (2)
Illumina MiSeq (2)
Using NEBNext Ultra II DNA Library (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
Advanced Sequencing Facility (1)
Epidermal cells : Trypsin dissociation / Dermal cells :MACS Whole Skin Dissociation Kit (1)
MACS Whole Skin Dissociation Kit (1)
GeneChip Scanner 2500 (1)
FACSAria (BD) (1)
Covaris E220evolution (1)
Illumina HiScanSQ (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)

Publication Date

2012 (131)
2015 (127)
2010 (122)
2013 (116)
2011 (113)
2014 (98)
2016 (58)
2009 (39)
2022 (35)
2008 (33)
2023 (21)
2026 (20)
2007 (19)
2025 (16)
2021 (13)
2018 (13)
2024 (12)
2020 (12)
2019 (11)
2006 (10)
2017 (8)
2005 (8)
2004 (2)

UNIPROT ID/AC

O94916 (2)
Q99653 (1)
P16298 (1)

CHEBI ID

CHEBI:16919 (6)
CHEBI:15891 (5)
CHEBI:15676 (4)
CHEBI:7676 (4)
CHEBI:17562 (4)
CHEBI:16750 (4)
CHEBI:17154 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:7916 (4)
CHEBI:17750 (4)
CHEBI:16737 (4)
CHEBI:16347 (4)
CHEBI:18089 (4)
CHEBI:17768 (3)
CHEBI:73074 (3)
CHEBI:16040 (3)
CHEBI:64489 (3)
CHEBI:16870 (3)
CHEBI:17748 (3)
CHEBI:16977 (3)
CHEBI:15428 (3)
CHEBI:17268 (3)
CHEBI:17015 (3)
CHEBI:27373 (3)
CHEBI:16865 (3)
CHEBI:16235 (3)
CHEBI:17509 (3)
CHEBI:16467 (3)
CHEBI:29108 (2)

Metabolite Name

Betaine (4)
Taurine (4)
Adenosine (4)
Creatine (4)
Glycerophosphocholine (4)
L-Arginine (3)
Acetylcarnitine (3)
Nicotinamide (3)
Choline (3)
Cytosine (3)
Cytidine (3)
Guanosine (3)
Creatinine (3)
L-Carnitine (3)
Hippuric acid (3)
Hypoxanthine (3)
LysoPC(15:0) (2)
LysoPC(20:5(5Z,8Z,11Z,14Z,17Z)) (2)
LysoPE(0:0/22:4(7Z,10Z,13Z,16Z)) (2)
Tetradecanoylcarnitine (2)
Stearoylcarnitine (2)
Leucine (2)
PC(16:0/16:0) (2)
Taurodeoxycholic acid (2)
Dimethylglycine (2)
Uracil (2)
Valine (2)
Arabinosylhypoxanthine (2)
Propionylcarnitine (2)
Thymine (2)

IsPrivate

False (2)

First Public Date

2013 (1)

Modelling Approach

Ordinary differential equation model (2)

Modification

N6 (1)

Study type

Transcription profiling by array (420)
ChIP-seq (231)
RNA-seq of coding RNA (86)
ChIP-chip by tiling array (64)
Methylation profiling by array (28)
Comparative genomic hybridization by array (24)
ChIP-chip by array (21)
DNA-seq (21)
RNA-seq of coding RNA from single cells (18)
Unknown experiment type (11)
Other (10)
Methylation profiling by high throughput sequencing (10)
RNA-seq of non coding RNA (7)
Transcription profiling by tiling array (5)
Genotyping by array (4)
MicroRNA profiling by array (3)
Cell line - High-throughput sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
Differential (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (255)
2025 (237)
2023 (191)
2024 (186)
2015 (179)
2021 (176)
2013 (141)
2012 (141)
2014 (136)
2010 (128)
2020 (122)
2011 (120)
2016 (108)
2019 (96)
2018 (84)
2017 (74)
2009 (42)
2026 (41)
2008 (37)
2007 (21)
2006 (12)
2005 (10)
2004 (3)

Lab affiliation

Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
Institute of Biomedical Science, Academia Sinica, Taiwan (1)
Wellcome Centre for Cell-Matrix Research, Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, United Kingdom (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, China (1)
Structural Biology MS 311, Room D1034C St. Jude Children's Research Hospital 262 Danny Thomas Place Memphis, TN 38105-3678 (1)
Department of Pharmacology Cancer Biology Institute Yale University School of Medicine (1)
Department of Applied Biology and Chemical Technology, Hong Kong Polytechnic University, Hung Hom, Hong Kong S.A.R., China (1)
Department of Andrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China (1)
Sun Yat-Sen University (1)
Zhejiang Universigy School of Medicine (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China. (1)
The Hong Kong Polytechnic University (1)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
School of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
School of Pharmaceutical Sciences Tsinghua University (1)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (1)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (1)
State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University , Xue Yuan Road No. 38, Beijing 100191, China. (1)
St. Jude Children’s Research Hospital (1)
St. Jude Children's Research Hospital (1)
Peking University (1)

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Synergic effect of CaI₂ and LiI on ionic conductivity of solution-based synthesized Li₇P₃S₁₁ solid electrolyte.

Not available

S-EPMC10865461 | biostudies-literature

Temperature-Controlled Synthesis of Li- and Mn-Rich Li_1.2Mn_0.54Ni_0.13Co_0.13O₂ Hollow Nano/Sub-Microsphere Electrodes for High-Performance Lithium-Ion Battery.

Not available

S-EPMC6893958 | biostudies-literature

Neutrophil gelatinase-associated lipocalin partly reflects the dynamic changes of renal function among chronic hepatitis C patients receiving direct-acting antivirals.

Not available

S-EPMC8389462 | biostudies-literature

Hepatitis C Viral Replication Complex.

Not available

S-EPMC8004249 | biostudies-literature

Cytochrome P450 2C9 (CYP2C9) polymorphisms in Chinese Li population.

Not available

S-EPMC4723878 | biostudies-literature

Synthesis of Li7P3S11 solid electrolyte in ethyl propionate medium for all-solid-state Li-ion battery.

Not available

S-EPMC12435569 | biostudies-literature

Comparative Study of Methanol Activation by Different Small Mixed Silicon Clusters Si₂M with M = H, Li, Na, Cu, and Ag.

Not available

S-EPMC6641899 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Differential gene expression profiling of MIHA cells transfected with C-terminal truncated HBx mutants

To compare the differentially expressed transcriptomes between MIHA cells transfected with empty vector control or different C-terminal truncated HBx mutants (14 or 35 amino acid carboxyl-terminal truncation - i.e. d14 and d35) mRNA profiles of MIHA cells stably overexpressing empty vector control o...

ORGANISM(S): Homo sapiens

2016-08-02 | E-GEOD-71993 | biostudies-arrayexpress

Hepatitis C Virus Down-Regulates the Expression of Ribonucleotide Reductases to Promote Its Replication.

Not available

S-EPMC10383090 | biostudies-literature

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2613 Results

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