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TranscriptomicsEvaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose
Recent advances in RNA sequencing (RNA-Seq) have enabled the discovery of novel transcriptomic variations that are not possible with traditional microarray-based methods. Tissue and cell specific transcriptome changes during pathophysiological stress, in disease cases versus controls and in response...
ORGANISM(S): Homo sapiens 
2013-07-12 | E-GEOD-46323 | biostudies-arrayexpress
UnknownBenchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data.
Not available
S-EPMC10594700 | biostudies-literature
UnknownSCALE: modeling allele-specific gene expression by single-cell RNA sequencing.
Not available
S-EPMC5407026 | biostudies-literature
UnknownCorrecting population stratification in genetic association studies using a phylogenetic approach.
Not available
S-EPMC2832820 | biostudies-literature
UnknownTempo: an unsupervised Bayesian algorithm for circadian phase inference in single-cell transcriptomics.
Not available
S-EPMC9630322 | biostudies-literature
TranscriptomicsTissue-specific RNA-seq in human evoked inflammation identifies novel blood and adipose lincRNA signatures of cardio-metabolic diseases
Inappropriate or sustained activation of innate immunity is a pathologic feature of several common cardio-metabolic disorders. Little is known, however, about transcriptomic modulation during inflammatory stress in disease-relevant human tissues. We applied deep RNA sequencing (RNA-seq) during low-d...
ORGANISM(S): Homo sapiens 
2014-01-02 | E-GEOD-50792 | biostudies-arrayexpress
UnknownBulk tissue cell type deconvolution with multi-subject single-cell expression reference.
Not available
S-EPMC6342984 | biostudies-literature
UnknownSpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning.
Not available
S-EPMC10082183 | biostudies-literature
ProteomicsDrosophila melanogaster LC-MSMS
we performed proteome sequencing in Drosophila at day 7 (young) and day 42 (old) under dietary restriction (DR)and ad libitum (AL) conditions.
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2021-09-09 | PXD021022 | Pride
Lc-msms Drosophila Plasma 
UnknownTranscriptome of the human retina, retinal pigmented epithelium and choroid.
Not available
S-EPMC4404213 | biostudies-literature
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