Liang Chun C - OmicsDI

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Transcriptomics (63)
Unknown (28)
Proteomics (7)
Genomics (3)
Metabolomics (3)

Organisms

Homo sapiens (30)
Mus musculus (19)
Rattus norvegicus (4)
Mycobacterium tuberculosis (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Staphylococcus aureus (2)
Bos taurus (2)
Camellia sinensis (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Streptococcus mutans UA159 (1)
Bacillus anthracis str. Sterne (1)
Populus trichocarpa x Populus deltoides (1)
Yersinia pestis (1)
Francisella tularensis (1)
Danio rerio (1)
Ganoderma lingzhi (1)
Streptomyces (1)

Repository

biostudies-arrayexpress (66)
pride (4)
iProX (3)
MetaboLights (2)
GNPS (1)

Tissue

Cell culture (1)
HeLa cell (1)
Renal cortical epithelial cell (1)

Disease

Chronic myelogenous leukemia (1)

Technology Type

Mass Spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry (2)
SRM/MRM (1)

Instrument Platform

ND-1000 spectrophotometer (Nano-drop Technology) and Bioanalyzer 2100 (1)
Tabletop centrifuges (1)
NextSeq 2000 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
MicrOTOF-Q II (1)
Q Exactive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
TripleTOF 5600 (AB Sciex) (1)

Publication Date

2010 (12)
2011 (10)
2014 (9)
2016 (8)
2015 (6)
2013 (5)
2009 (5)
2026 (4)
2008 (4)
2012 (3)
2022 (2)
2019 (1)
2007 (1)
2006 (1)
2004 (1)
2020 (1)
2021 (1)
2024 (1)
2025 (1)

CHEBI ID

CHEBI:16811 (2)
CHEBI:17126 (2)
CHEBI:27897 (2)
CHEBI:28300 (2)
CHEBI:10002 (1)
CHEBI:10022 (1)
CHEBI:10037 (1)
CHEBI:10070 (1)
CHEBI:10072 (1)
CHEBI:10106 (1)
CHEBI:101064 (1)
CHEBI:10138 (1)
CHEBI:10432 (1)
CHEBI:10577 (1)
CHEBI:10607 (1)
CHEBI:107634 (1)
CHEBI:107641 (1)
CHEBI:107662 (1)
CHEBI:11060 (1)
CHEBI:113528 (1)
CHEBI:113543 (1)
CHEBI:116314 (1)
CHEBI:122 (1)
CHEBI:132121 (1)
CHEBI:132244 (1)
CHEBI:132267 (1)
CHEBI:132471 (1)
CHEBI:132506 (1)
CHEBI:132634 (1)
CHEBI:132789 (1)

Metabolite Name

Methionine (2)
(+)-(s)-carvone (1)
(+)-ar-turmerone (1)
(+)-catechin (hydrate) (1)
(+/-)-c75 (1)
(+/-)-cannabichromeorcin (1)
(+/-)-cp 47,497-c7-hydroxy metabolite (1)
(-)-a-pinene (1)
(-)-camphanic acid (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(-)-epigallocatechin (1)
(-)-gallocatechin (1)
(-)-isopulegol (1)
(-)-pentazocine (1)
(-)-syringaresinol di-o-glucoside (1)
(1ar,2s,5s,6r,7r,7as)-5-methyl-1a-(3-methyl-2-buten-1-yl)-1a,3,5,6,7,7a-hexahydro-2h-oxireno[g]isochromene-2,6,7-triol (1)
(1r,3r,8s,10r,13s,16s,17r)-6,12,17-trihydroxy-16-methyl-8-(2-methyl-2-propanyl)-2,4,14,19-tetraoxahexacyclo[8.7.2.01,11 03,7 07,11 013,17]nonadecane-5,15,18-trione (1)
(1r,9r)-5-cyclohexyl-11-(propylsulfonyl)-7,11-diazatricyclo[7.3.1.02,7]trideca-2,4-dien-6-one (1)
(2e,4ar,6r,7s,8e,10r)-10-acetoxy-4a-hydroxy-1,1,3,6,9-pentamethyl-4-oxo-1a,4,4a,5,6,7,7a,10,11,11a-decahydro-1h-cyclopenta[a]cyclopropa[f][11]annulen-7-yl benzoate (1)
(2s,3s)-3,5,7-trihydroxy-6-methyl-2-(3,4,5-trihydroxyphenyl)-2,3-dihydro-4h-chromen-4-one (1)
(3ar,4s,6r,11ar)-6,9-dihydroxy-6,10-dimethyl-3-methylene-2,7-dioxo-2,3,3a,4,5,6,7,8,9,11a-decahydrocyclodeca[b]furan-4-yl methacrylate (1)
(3as,10ar,10br)-6,10a-dimethyl-3-methylene-3,3a,4,5,7,8,10a,10b-octahydrofuro[3',2':6,7]cyclohepta[1,2-b]pyran-2,9-dione (1)
(3e,12e)-3,12-dimethyl-8-methylene-6,18-dioxatricyclo[14.2.1.05,9]nonadeca-3,12,16(19)-triene-7,17-dione (1)
(4e)-1,7-bis(4-hydroxyphenyl)-4-hepten-3-one (1)
(5r,6s)-5-hydroxy-4-methoxy-6-(2-phenylethyl)-5,6-dihydro-2h-pyran-2-one (1)
(7r,8s)-7,8-dihydroxy-3,7-dimethyl-6-oxo-7,8-dihydro-6h-isochromene-5-carbaldehyde (1)
(8e)-11,13-dihydroxy-4-methyl-4,5,6,7-tetrahydro-2h-3-benzoxacyclododecine-2,10(1h)-dione (1)
(<u+00b1>)-abscisic acid (1)
1,3,5-trimethoxybenzene (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (10)
Unknown experiment type (4)
ChIP-seq (3)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2011 (13)
2010 (12)
2014 (10)
2016 (9)
2015 (6)
2013 (6)
2009 (5)
2022 (5)
2019 (4)
2012 (4)
2008 (4)
2023 (3)
2021 (3)
2020 (3)
2026 (1)
2007 (1)
2006 (1)
2004 (1)
2024 (1)
2018 (1)
2017 (1)

Lab affiliation

Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing, China (1)
Shandong Technology Innovation Center of Molecular Targeting and Intelligent Diagnosis and Treatment, Binzhou Medical University, Yantai, China. (1)

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Hypoxia response in C. neoformans in H99, CM092 and CM098

(1) The identification of genes that are transcriptionally regulated in response to exposure to hypoxia (~0.2% oxygen) in H99 (WT) and strains CM092 and CM098. (2) The identification of genes that are differentially-regulated in the strain CM093 compared to H99 (WT) Keywords: hypoxia response, compa...

ORGANISM(S): Filobasidiella neoformans

2010-06-12 | E-GEOD-6226 | biostudies-arrayexpress

shld1 effect on 3T3 cell

NIH3T3 cells were cultured in medium containing 1 uM, 100 nM, 10 nM and 0 nM (serve as control) shld1 for 24 hours. Three independent cultures were obtained for each drug concentration. Total RNA from experimental samples were extracted using RNeasy Kit (Qiagen). Mouse RNA pooled from 11 cell line...

ORGANISM(S): Mus musculus

2007-09-27 | E-GEOD-5916 | biostudies-arrayexpress

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_Herbivory

From a set of 15 standard, normalized or full-length cDNA libraries, we generated 139 007 3'- or 5'-end sequenced ESTs, representing more than one-third of the c. 385 000 publicly available Populus ESTs. Clustering and assembly of 107 519 3'-end ESTs resulted in 14 451 contigs and 20 560 singletons,...

ORGANISM(S): Populus trichocarpa x Populus deltoides

2008-04-22 | E-GEOD-9522 | biostudies-arrayexpress

Label free quantitative proteomics analysis based on LC-MS in Caki-1 to reveal the pathways associated with ERRα in ccRCC

To investigate the regulatory role of orphan nuclear receptor ERRα in the progression of ccRCC, we conducted the stable knockdown of ERRα in Caki-1 with shRNA lentivirus. The total protein samples of Caki-1 with shCtrl and shERRα were collected and subjected to label free quantitative proteomics ana...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD041739 | Pride

Mast cell expression data from murine aryl hydrocarbon receptor (AhR) null, AhR_d and normal control mice

We found that AhR, a unique chemical sensor, is critical in controlling mast cell differentiation, growth and function in vitro and in vivo. This study seeks to further the understanding of the mechanisms of how AhR control mast cell homeostasis. Three different batches of bone marrow derived mast c...

ORGANISM(S): Mus musculus

2013-04-01 | E-GEOD-44715 | biostudies-arrayexpress

Defining AP4- and MYC-regulated gene expression programs in germinal center B cells during cyclic re-entry

B cells diversify and affinity-mature their antigen receptor repertoire in germinal centers (GC). GC B cells receive help signals during transient interaction with T cells, yet it remains unknown how these transient T-B interactions sustain the subsequent proliferative program of selected B cells. H...

ORGANISM(S): Mus musculus

2016-08-23 | E-GEOD-80669 | biostudies-arrayexpress

Transcription profiling of human embryonic stem cells and neuroepithelial cells

Comparing gene expressing profile of human embryonic stem cells and neuroepithelial cells differentiated from human embryonic stem cells.

ORGANISM(S): Homo sapiens

2009-11-08 | E-MEXP-2426 | biostudies-arrayexpress

Transcription profiling of Arabidopsis shoots, roots and cell cultures

Microarray analysis of the changes in transcript abundance in cell culture and shoot

ORGANISM(S): Arabidopsis thaliana

2008-07-19 | E-ATMX-31 | biostudies-arrayexpress

Disrupted Gray Matter Networks Associated with Cognitive Dysfunction in Cerebral Small Vessel Disease.

Not available

S-EPMC10605932 | biostudies-literature

The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis

BACKGROUND: Traditional Chinese medicine has used Peucedanum praeruptorum Dunn (Apiaceae) for a long time. Various coumarins, including the significant root constituents Praeruptorin (A-E), are the active constituents of the dried roots of P. praeruptorum. Previous trans...

2024-04-02 | MTBLS8679 | MetaboLights

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