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TranscriptomicsBiomarker genes highlight intraspecific and interspecific variations in the responses of Pinus taeda L. and Pinus radiata D. Don to Sirex noctilio F. acid gland secretions
Sirex noctilio F., a Eurasian horntail woodwasp recently introduced into North America, oviposits in pines and other conifers and in the process spreads a phytopathogenic fungus that serves as a food source for its larvae. During oviposition the woodwasp also deposits a mucus produced in its acid (...
ORGANISM(S): Pinus taeda 
2012-08-09 | E-GEOD-40000 | biostudies-arrayexpress
TranscriptomicsExpression data MCF10A/ErbB2 RB-proficient and RB-deficient cells cultured in 3-D cell culture
Gene expression analysis for structural components in Rb-deficient and RB-proficient ErbB2-overexpressing immortalized breast cell line using 3-D cell culture model to analyze structural and organizational changes of epithelial cells. Cells were cultured in a reconstituted membrane for 7 days. Cells...
ORGANISM(S): Homo sapiens 
2013-03-01 | E-GEOD-36425 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis roots from plants grown in nutrient solutions with various concentrations of nitrate and sucrose
We used Arabidopsis thaliana Col-0 for all experiments. The plants were grown hydroponically on nutrient solution as described previously [Plant J 1999, 18(5):509-519]. Briefly, plants were grown on sand, placed in custom-designed styrofoam rafts, in a growth chamber (EGC, Chagrin Falls, OH, USA) at...
ORGANISM(S): Arabidopsis thaliana 
2006-11-30 | E-MEXP-828 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses
Rice blast is the most threatening disease to cultivated rice worldwide. Magnaporthe oryzae, its causal agent is likely to encounter environmental challenges during invasive growth in the host plants that require shifts in gene expression to establish a compatible interaction. Here, we tested the hy...
ORGANISM(S): Magnaporthe oryzae 
2011-01-24 | E-GEOD-21908 | biostudies-arrayexpress
TranscriptomicsRole of LDB1 in the transition from chromatin looping to transcription activation
Many questions remain about how close association of genes and distant enhancers occurs and how this is linked to transcription activation. In erythroid cells, LDB1 is recruited to the β-globin locus via LMO2 and is required for looping of the β-globin locus control region (LCR) to the active β-glob...
ORGANISM(S): Mus musculus 
2014-07-02 | E-GEOD-54549 | biostudies-arrayexpress
TranscriptomicsRL-SAGE analysis of Zea mays leaf transcriptome
Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the d...
ORGANISM(S): Zea mays 
2010-12-10 | E-GEOD-25994 | biostudies-arrayexpress
TranscriptomicsSingle cell Hi-C reveals cell-to-cell variability in chromosome structure
Large-scale chromosome structure and spatial nuclear arrangement have been linked to control of gene expression and DNA replication and repair. Genomic techniques based on chromosome conformation capture assess contacts for millions of loci simultaneously, but do so by averaging chromosome conformat...
ORGANISM(S): Mus musculus 
2013-09-26 | E-GEOD-48262 | biostudies-arrayexpress
TranscriptomicsOryza Sativa and Magnaporthe Grisea LongSAGE
LongSAGE library in this series are from 'Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System' project. This work is supported by NSF-PGRP #0115642. Keywords: other
ORGANISM(S): Oryza sativa Japonica Group 
2004-11-07 | E-GEOD-1924 | biostudies-arrayexpress
TranscriptomicsStem cell factor programs the mast cell activation phenotype
Mast cells, activated by antigen via the high affinity receptor for IgE (FcεRI), release an array of pro-inflammatory mediators that contribute to allergic disorders such as asthma and anaphylaxis. The KIT ligand, stem cell factor (SCF), is critical for mast cell expansion, differentiation and survi...
ORGANISM(S): Mus musculus 
2012-05-01 | E-GEOD-35332 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse C2C12 myoblast induced with tetracycline to enhance integrin alpha7 expression
Analysis of C2C12 myoblast induced with tetracycline to enhance integrin alpha7 expression. Integrin alpha7 is the major laminin binding integrin in muscle cells. Enhancing its expression has been demonstrated to alleviate pathology in a murine model of Duchenne muscular dystrophy. Results of this s...
ORGANISM(S): Mus musculus 
2008-06-16 | E-GEOD-8312 | biostudies-arrayexpress
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