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TranscriptomicsChIP-chip by array of yeast using Sir2 in Lieb et al 2001
All Sir2 immunoprecipitation experiments associated with Lieb et al. Nature Genetics, August 2001, Volume 28, Issue 4
ORGANISM(S): Saccharomyces cerevisiae 
2013-01-30 | E-SMDB-605 | biostudies-arrayexpress
TranscriptomicsChIP-chip by array of yeast - control and mock experiments in Lieb et al 2001
All control or mock immunoprecipitation experiments associated with Lieb et al. Nature Genetics, August 2001, Volume 28, Issue 4
ORGANISM(S): Saccharomyces cerevisiae 
2013-01-30 | E-SMDB-608 | biostudies-arrayexpress
TranscriptomicsLieb AB3594_H3K79ME2346021_N2_L3
modENCODE_submission_3321 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2011-01-17 | E-GEOD-26182 | biostudies-arrayexpress
TranscriptomicsLieb AB2621_H3K79ME3_361576_N2_L3
modENCODE_submission_3322 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2011-01-17 | E-GEOD-26183 | biostudies-arrayexpress
TranscriptomicsRap1, Sir2, Sir3, Sir4 immunoprecipitations
All Rap1, Sir2, Sir3, Sir4, and mock immunoprecipitation experiments associated with Lieb et al. Nature Genetics, August 2001, Volume 28, Issue 4 Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed
ORGANISM(S): Saccharomyces cerevisiae 
2005-09-24 | E-GEOD-3360 | biostudies-arrayexpress
TranscriptomicsA map of open chromatin in human pancreatic islets
High-throughput sequencing of genomic regions isolated using FAIRE (Formaldehyde-assisted isolation of regulatory elements) from three purified pancreatic islet samples For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCO...
ORGANISM(S): Homo sapiens 
2010-01-31 | E-GEOD-17616 | biostudies-arrayexpress
GenomicsmodENCODE_Lieb and White Lab: unltra-deep sequencing data of genomic DNA, chromatin input, and ChIP of Su(Hw) and H3K36me3 from S2 cells on Illumina Genome Analyzer.
This is a dataset generated by the modENCODE Project. It contains both the pair-end and single-end sequencing data of genomic DNA, chromatin input and the ChIP of the factors Su(Hw) and H3K36me3 from Drosophila S2 cells and it was generated on Illumina Genome Analyzer. The goal was to sequence ~120M...
ORGANISM(S): Drosophila melanogaster 
2011-03-04 | E-GEOD-27679 | biostudies-arrayexpress
TranscriptomicsMeiotic time course: open chromatin and expression profile
This SuperSeries is composed of the following subset Series: GSE16163: Meiotic time course of open chromatin as measured by FAIRE GSE18181: Meiotic time course expression profile Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae SK1 
2009-09-25 | E-GEOD-18256 | biostudies-arrayexpress
TranscriptomicsEffects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [RNA_seq]
Experiments performed over the past three decades have shown that nucleosomes are transcriptional repressors. In Saccharomyces cerevisiae, depletion of histone H4 results in the genome-wide transcriptional de-repression of hundreds genes. The mechanism of de-repression is hypothesized to be rooted d...
ORGANISM(S): Saccharomyces cerevisiae 
2012-09-26 | E-GEOD-29293 | biostudies-arrayexpress
GenomicsEffects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [single-end MNase-seq]
Experiments performed over the past three decades have shown that nucleosomes are transcriptional repressors. In Saccharomyces cerevisiae, depletion of histone H4 results in the genome-wide transcriptional de-repression of hundreds genes. The mechanism of de-repression is hypothesized to be rooted d...
ORGANISM(S): Saccharomyces cerevisiae 
2012-09-26 | E-GEOD-29291 | biostudies-arrayexpress
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