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ProteomicsComparative proteomic analysis between light and dark-adapted Euglena gracilis
We sequenced and assembled a detailed transcriptome and draft genome for E. gracilis Z1. To improve annotation and investigate gene expression in E. gracilis, where most transcripts are also trans-spliced, we conducted comparative proteomic and transcriptomic analysis between light and dark-adapted ...
ORGANISM(S): Euglena gracilis 
2019-01-14 | PXD009998 | Pride
Euglena gracilis Photosynthesis Plastid Light dark adaption 
ModelsLarbat2016.3 - Modeling the diversion of primary carbon flux into secondary metabolism under variable nitrate and light or dark conditions (Light Dark Cycles with Minimum Starch Adaption)
This is a global mathematical model describing metabolic partitioning of carbon resources in plants between growth and defense, as a function of nitrate fertilization. The model hinges on the dynamics of sucrose inflow/outflow properties. The model also accounts for variations in photosynthetic acti...
2024-09-02 | BIOMD0000000859 | BioModels
TranscriptomicsA binary redox control mode in gene expression and metabolism of plants
To analyze the impact of photosynthetic redox signals, light sources with spectral qualities that preferentially excite either Photosystem I (PSI light) or Photosystem II (PSII light) were used. The light sources have been described in (Fey et al., 2005). Strong reduction and oxidation signals were ...
ORGANISM(S): Arabidopsis thaliana 
2010-06-24 | E-GEOD-9235 | biostudies-arrayexpress
TranscriptomicsExpression data from F344N rats in long and short photoperiods
Rats were housed in either long day (LD, 16:8 hours, light:dark) or short day (SD, 8:16 hours, light dark) photoperiods for 3, 14 and 28 days and brains removed, frozen on dry ice and then hypothalamic arcuate nucleus tissue blocks cut for RNA extraction. At each time point 4 rats were used in each ...
ORGANISM(S): Rattus norvegicus 
2012-02-21 | E-GEOD-27926 | biostudies-arrayexpress
Transcriptomicsprors1_dark_vs_WT_dark
Series of 6 repetitions of hybridization of treatment (prors1_dark) and control (WT_dark) each. Comparison of the dark adapted Arabidopsis prors1 mutant lacking prolyl tRNA synthetase versus the dark adapted WT. P. Pesaresi, D. Leister, unpublished
ORGANISM(S): Arabidopsis thaliana 
2010-06-06 | E-GEOD-1495 | biostudies-arrayexpress
Transcriptomicsprors2_dark_vs_WT_dark
Series of 6 repetitions of hybridization of treatment (prors2_dark) and control (WT_dark) each. Comparison of the dark adapted Arabidopsis prors2 mutant lacking prolyl tRNA synthetase versus the dark adapted WT. P. Pesaresi, D. Leister, unpublished Keywords: repeat sample
ORGANISM(S): Arabidopsis thaliana 
2004-09-01 | E-GEOD-1496 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mice mutant for prCAD vs BALBC after dark adaption or retinal damage to investigate the genomic response to retinal disease and injury.
This SuperSeries is composed of the following subset Series:; GSE10528: The retinal transcriptional response to light damage; GSE10535: Retinal transcripts level alteration in the prCAD -/- mouse, a model for retinal degeneration Experiment Overall Design: Refer to individual Series
ORGANISM(S): Mus musculus 
2008-04-07 | E-GEOD-10577 | biostudies-arrayexpress
TranscriptomicsGene expression of Arabidopsis leaves under heat stress and during recovery
To understand plant adaptation to heat stress, gene expression profiles of Arabidopsis leaves under heat stress, during recovery and control condition were obtained using microarray. Microarray data listed responsible candidate genes for glycerolipid metabolism. Arabidopsis thaliana ecotype Columbia...
ORGANISM(S): Arabidopsis thaliana 
2015-05-27 | E-GEOD-63128 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rice transgenics expressing rice full-length cDNAs vs wild-type Col-0
We generated more than 23,000 independent Arabidopsis transgenic lines that expressed rice fl-cDNAs (Rice FOX Arabidopsis lines). The short generation time and rapid and efficient transformation frequency of Arabidopsis enabled the functions of the rice genes to be analyzed rapidly. We screened rice...
ORGANISM(S): Arabidopsis thaliana 
2008-12-05 | E-GEOD-13165 | biostudies-arrayexpress
MetabolomicsPhotoperiod-mediated transcriptional and metabolic reprogramming confers salt stress tolerance via the ascorbate-glutathione cycle and phenylpropanoid pathway in Ginkgo biloba
Ginkgo biloba, one of the oldest extant relict tree species, is highly valued for its medicinal properties. However, soil salinization has emerged as a severe global ecological challenge, substantially restricting plant growth, development, and geographical distribution. While light signaling, parti...
2026-07-22 | MTBLS15130 | MetaboLights
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