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TranscriptomicsTranscription profiling of human BJ fibroblasts after LIN-9 depletion by a shRNA
Aim: identification of differentially expressed genes after LIN-9 depletion.

hTERT immortalized human BJ fibroblasts were infected with pMSCV-Blasticidin based retroviruses encoding a shRNA which targets human LIN-9 and the empty vector respectively.
After 4 days of selection total RNA ...
ORGANISM(S): Homo sapiens 
2006-11-23 | E-MEXP-752 | biostudies-arrayexpress
MetabolomicsSystemic Inflammation Induces Cholestasis via Upregulating a Short Variant of FTO to Remove the m6A Methylation in the 3’-UTR of Cyp7b1 mRNAs in liver
The cholestasis frequently occurs in patients with inflammatory processes. However, the mechanisms of inflammation in inducing cholestasis are still unclear. Here, by using lipopolysaccharide (LPS)-induced cholestasis mouse models, we found that most genes encoding enzymes responsible for bile acid ...
2025-11-07 | MTBLS10713 | MetaboLights
ProteomicsInner membrane proteome of E. coli Min mutant
In bacteria, proteins of the MinD/ParA superfamily are reported to partition DNA and protein complexes to designate subcellular location. Among them, the E. coli Min system is a prominent example to demonstrate that the protein function is spatially regulated by the dynamic subcellular localization ...
ORGANISM(S): Escherichia coli 
2016-02-23 | PXD002548 | Pride
Cell division The min system Itraq E. coli Membrane 
TranscriptomicsExpression profiling of P. stutzeri A1501 treated with 20mM ammonia shock for 10 min
A whole genome DNA microarray was used to undertake a global transcriptional analysis of nitrogen fixation and ammonium repression in Pseudomonas stutzeri A1501. The aim of this study was to identify the genes that are up-regulated under nitrogen fixation conditions and rapidly down-regulated as soo...
ORGANISM(S): Pseudomonas stutzeri A1501 
2010-05-14 | E-GEOD-14775 | biostudies-arrayexpress
no omics definedTranscription profiling of Listeria monocytogenes EGD-e after heat-shock for 3, 10, 20, and 40 min
L. monocytogenes EGD-e (Glaser et al., 2001) was grown in Brain Hearth Infusion Broth (Difco) with shaking (200 rpm, New Brunswick C24KC) using 10 ml culture medium in 100 ml conical flasks. An exponentially growing culture was used to inoculate 100 ml of fresh pre-warmed BHI broth in a 500 ml flask...
ORGANISM(S): Listeria monocytogenes 
2007-10-09 | E-MEXP-1118 | biostudies-arrayexpress
UnknownGenomic Functional Analysis and Cellulase Characterization for the Enzyme-Producing Strain <i>Bacillus subtilis</i> Y4X3 Isolated from Saline-Alkaline Soil in Xinjiang, China.
Not available
S-EPMC11944486 | biostudies-literature
TranscriptomicsTCF7 is a key regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line
A critical problem in biology is understanding how cells choose between self-renewal and differentiation. To generate a comprehensive view of the mechanisms controlling early hematopoietic precursor self-renewal and differentiation, we used systems-based approaches and murine EML multipotential hema...
ORGANISM(S): Mus musculus 
2012-03-29 | E-GEOD-30068 | biostudies-arrayexpress
ProteomicsProteomic and phosphoproteomic profiling of Lin⁻c-Kit⁺ cells from normal C57BL/6J mice and GFP⁺Lin⁻c-Kit⁺ cells from MLL-AF9-driven AML mouse model
Proteomic and Phosphoproteomic profiling of Lin⁻c-Kit⁺ cells from normal C57BL/6J mice and GFP⁺Lin⁻c-Kit⁺ cells from MLL-AF9-driven AML mouse model
ORGANISM(S): Mus musculus (Mouse) 
2026-07-06 | PXD077604 | Pride
Phosphoproteomic Proteomic Aml 
ProteomicsQuantitative Proteomics Reveals Antibiotics Resistance Function of Outer Membrane Proteins in Aeromonas hydrophila
Each colony of A. hydrophila and the OXY-R strain were incubated in 5 mL LB medium overnight, and then diluted in 100 mL fresh LB medium at a ratio of 1:100 and subsequently cultured until the optical density at 600 nm (OD600) reached 1.0. The cultures were harvested via centrifuging for 20 min at 1...
ORGANISM(S): Aeromonas hydrophila subsp. hydrophila ATCC 7966 
2018-11-23 | PXD009622 | Pride
Aeromonas hydrophila， outer membrane proteins， antibiotics resistance Lc-ms/ms 
TranscriptomicsRNA-seq of mouse adipose stem and progenitor cells
Population control for the scRNA-seq based analysis a well-established fraction of mouse subcutaneous adipose-derived stromal vascular fraction (SVF) cells that is generally considered to harbour adipogenic stem and progenitor cells (ASPCs). We collected Lin- (CD31- CD45- TER119-) CD29+ CD34+ SCA1+ ...
ORGANISM(S): Mus musculus 
2018-05-01 | E-MTAB-5818 | biostudies-arrayexpress
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