Lin Ran R - OmicsDI

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Unknown (92)
Transcriptomics (17)
Proteomics (10)
Genomics (3)
Metabolomics (3)

Organisms

Mus musculus (14)
Homo sapiens (11)
Danio rerio (2)
Rattus norvegicus (2)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (19)
iProX (7)
MetaboLights (3)
pride (3)
EGA (1)

Tissue

B cell (1)
Brain (1)
Cell culture (1)
Hepatocyte (1)
Macrophage (1)
Spleen (1)

Disease

Chronic lymphocytic leukemia (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (3)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina MiSeq (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (4)
2026 (3)
2015 (3)
2014 (3)
2013 (3)
2008 (3)
2023 (3)
2011 (2)
2024 (2)
2016 (1)
2012 (1)
2010 (1)
2004 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:16384 (1)
CHEBI:165803 (1)
CHEBI:17417 (1)
CHEBI:17818 (1)
CHEBI:18012 (1)
CHEBI:27897 (1)
CHEBI:28044 (1)
CHEBI:28527 (1)
CHEBI:65665 (1)
CHEBI:6650 (1)
CHEBI:70976 (1)
CHEBI:72868 (1)
CHEBI:73765 (1)
CHEBI:85158 (1)
CHEBI:90333 (1)
CHEBI:9630 (1)

Metabolite Name

Malic acid (2)
(-)-Allantoin (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1-(5-Fluoropentyl)-1H-indol-3-yl)(4-methylnaphthalen-1-yl)methanone (1)
(1R,2R,9R)-1-piperidin-2-yl-3,15-diazatetracyclo[7.7.1.02,7.010,15]heptadecane (1)
(1R,4R,5R)-2-methyl-5-[(2S)-6-methylhept-5-en-2-yl]cyclohex-2-ene-1,4-diol (1)
(2E)-Decenoyl-ACP (1)
(2R)-2-[(2R,3R,4S)-3,4-bis(2-hydroxyethoxy)oxolan-2-yl]-2-hydroxyethyl dodecanoate (1)
(2R,3R,4S,5S,6R)-2-[[(1R,2S,6S,9S,10S,11S,14S,15S,17S,18S,20S,23R,24S)-10,17-dihydroxy-6,10,23-trimethyl-4-azahexacyclo[12.11.0.02,11.04,9.015,24.018,23]pentacosan-20-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol (1)
(2S)-4-(acetylamino)-2-aminobutanoic acid (1)
(2S)-hydroxy(4-hydroxyphenyl)ethanoic acid (1)
(2S,3E,6R)-3,7-Dimethyl-3-octene-1,2,6,7-tetrol (1)
(2S,4S)-2-amino-5-(carbamoylamino)-4-hydroxypentanoic acid (1)
(2Z)-2-aminobut-2-enoic acid (1)
(3S)-2-hydroxy-2,3-dimethylbutanedioic acid (1)
(3Z,6Z,9Z)-dodecatrienol (1)
(4R,7S,7aR,12bS)-9-methoxy-1,2,3,4,4a,7,7a,13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinolin-7-ol (1)
(5-hydroxy-7-methoxy-2,2-dimethyl-3,4-dihydro-2H-1-benzopyran-4-yl)oxidanesulfonic acid (1)
(8R,9R,10R,13S,14R,17R)-13-ethyl-17-ethynyl-17-hydroxy-1,2,6,7,8,9,10,11,12,14,15,16-dodecahydrocyclopenta[a]phenanthren-3-one (1)
(E)-2-Butenyl-4-methyl-threonine (1)
(R)-3-Amino-3-phenylpropanoic acid (1)
(R)-demethyl-4-deoxygadusol (1)
(Rs)-Mevalonic Acid (1)
(S)-(+)-allantoin (1)
(S)-3-Hydroxyisobutyric acid (1)
(S)-Methylmalonic acid semialdehyde (1)
(S1)-Methoxy-3-heptanethiol (1)
(Z)-3-(1-Formyl-1-propenyl)pentanedioic acid (1)
(¡À)13-HpODE (1)
1,2,4,5-Tetramethylbenzene (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (4)
Unknown experiment type (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (15)
2024 (12)
2022 (11)
2014 (9)
2023 (9)
2021 (8)
2018 (8)
2015 (7)
2013 (6)
2016 (5)
2020 (4)
2026 (3)
2008 (3)
2012 (2)
2011 (2)
2004 (2)
2017 (2)
2010 (1)
2019 (1)
2005 (1)

Lab affiliation

Dana-Farber Cancer Institute (1)
Kinases and Brain Development Lab, The Francis Crick Institute (UK) (1)
PhD student, Department of Biochemistry, Emory University (1)

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USP13 dictates Ran turnover and vulnerability to ferroptosis in diffuse large B cell lymphoma (DLBCL).

Not available

S-EPMC12663190 | biostudies-literature

Quantitative Analysis by Next Generation Sequencing of LSK (Lin- Sca1+ cKit+) hematopoietic progenitors and splenic B cells (naive and in vitro LPS activated) transcriptomes from Wild Type and Usp3-/- mice

Purpose: the goal of this study is to investigate the consequences of USP3 deletion on gene expression in mouse LSK hematopoietic progenitors and in splenic B cells Methods: mRNA profiles of 8 weeks-old wild-type (WT) and ubiquitin specific protease 3 knockout (Usp3−/−) mice were generated by deep ...

ORGANISM(S): Mus musculus

2014-07-24 | E-GEOD-58495 | biostudies-arrayexpress

Heat-shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic flux.

Not available

S-EPMC12087658 | biostudies-literature

LIM domain binding protein 1 regulates a transcriptional program essential for hematopoietic stem cell maintenance

We used ChIP-Seq to map Ldb1, Scl and Gata2 binding sites in mouse hematopoietic progenitor cells (HPCs). Together with functional studies using conventional and conditional Ldb1 deficient mouse models and bioinformatics analysis, we systematically determined a transcriptional program controlled by ...

ORGANISM(S): Mus musculus

2011-01-04 | E-GEOD-26031 | biostudies-arrayexpress

Transcription profile of CD103- vs CD103+ dendritic cells derived from CX3CR1+c-kit+- bone marrow cells (M1993 M2067)

We hypothesize that under homeostatic as well as inflammatory conditions circulating monocytes and/or their bone marrow-derived progenitors might contribute to the replenishment of CD103+ and CD103- DC in lymphoid and non-lymphoid compartments. To that end, bone marrow cells from CX3CR1+/gfp C57BL/6...

ORGANISM(S): Mus musculus

2008-12-17 | E-GEOD-10882 | biostudies-arrayexpress

Targeting RCC1 to block the human soft-tissue sarcoma by disrupting nucleo-cytoplasmic trafficking of Skp2.

Not available

S-EPMC10985091 | biostudies-literature

Rheb and TRF1 PhastID mass spectrometric data

Rheb is a small G protein that functions as the direct activator of the mechanistic target of rapamycin complex 1 (mTORC1) to coordinate signaling cascades in response to nutrients and growth factors. Despite extensive studies, the guanine nucleotide exchange factor (GEF) that directly activates Rhe...

ORGANISM(S): Homo Sapiens

2022-09-29 | PXD037078 |

High mitochondrial respiration and glycolytic capacity represent a metabolic phenotype of human tolerogenic dendritic cells

Human monocyte-derived dendritic cells (moDCs) have been used as an in vitro model for studying tolerance and immunity. However, the underlying metabolic states of tolerogenic (dexamethasone and vitamin D3-treated), immature and immunogenic (mature, LPS-treated) moDCs have not been completely charac...

ORGANISM(S): Homo sapiens

2015-05-08 | E-GEOD-52894 | biostudies-arrayexpress

Functional and Transcriptome Analysis Reveal Specific Roles of Dimocarpus longan DlRan3A and DlRan3B in Root Hair Development, Reproductive Growth, and Stress Tolerance.

Not available

S-EPMC10891736 | biostudies-literature

Therapeutic mesopore construction on 2D Nb₂C MXenes for targeted and enhanced chemo-photothermal cancer therapy in NIR-II biowindow.

Not available

S-EPMC6134934 | biostudies-literature