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ProteomicsA conserved nucleotide-dependent metal chaperone for managing the cellular zinc economy during zinc limitation
How cells safeguard essential zinc-dependent functions during zinc deficiency is poorly understood. A long-debated strategy is whether soluble metal-trafficking chaperones exist to prioritize specific zinc-dependent proteins. We identified a eukaryotic family of metallochaperones that physically int...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
MSV000088135 | MassIVE
TranscriptomicsAromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (III)
Efficient microbial conversion of lignocellulosic hydrolysates to biofuels is a key barrier to the economically viable deployment of lignocellulosic biofuels. A chief contributor to this barrier is the impact on microbial processes and energy metabolism of lignocellulose-derived inhibitors, includin...
ORGANISM(S): Escherichia coli 
2014-07-18 | E-GEOD-58976 | biostudies-arrayexpress
TranscriptomicsAromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (II)
Efficient microbial conversion of lignocellulosic hydrolysates to biofuels is a key barrier to the economically viable deployment of lignocellulosic biofuels. A chief contributor to this barrier is the impact on microbial processes and energy metabolism of lignocellulose-derived inhibitors, includin...
ORGANISM(S): Escherichia coli 
2014-07-18 | E-GEOD-58902 | biostudies-arrayexpress
TranscriptomicsAromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (I)
Efficient microbial conversion of lignocellulosic hydrolysates to biofuels is a key barrier to the economically viable deployment of lignocellulosic biofuels. A chief contributor to this barrier is the impact on microbial processes and energy metabolism of lignocellulose-derived inhibitors, includin...
ORGANISM(S): Escherichia coli 
2014-07-18 | E-GEOD-58806 | biostudies-arrayexpress
TranscriptomicsAromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (IV)
Efficient microbial conversion of lignocellulosic hydrolysates to biofuels is a key barrier to the economically viable deployment of lignocellulosic biofuels. A chief contributor to this barrier is the impact on microbial processes and energy metabolism of lignocellulose-derived inhibitors, includin...
ORGANISM(S): Escherichia coli 
2014-07-18 | E-GEOD-58977 | biostudies-arrayexpress
TranscriptomicsAromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (V)
Efficient microbial conversion of lignocellulosic hydrolysates to biofuels is a key barrier to the economically viable deployment of lignocellulosic biofuels. A chief contributor to this barrier is the impact on microbial processes and energy metabolism of lignocellulose-derived inhibitors, includin...
ORGANISM(S): Escherichia coli 
2014-07-18 | E-GEOD-59397 | biostudies-arrayexpress
ProteomicsColumbia River sediment HUM-V (Hyporheic Uncultured Microbial and Viral) database metaproteome
Metaproteomic data for Rodriguez-Ramos, et al. interrogating microbial and viral communities of hyporheic river sediments within the Columbia River. Samples were digested with trypsin, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2021-04-28 | MSV000087330 | MassIVE
UnknownDNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers.
Not available
S-EPMC2605660 | biostudies-literature
ProteomicsIron-starvation induces photosystem I antenna remodeling in green algae
Dunaliella salina and Dunaliella tertiolecta are extremophile, marine algae that can survive in very low Fe conditions. In this study, we used TMT-proteomics to compare the Fe starvation responses to the Fe replete responses. Samples were digested with trypsin, labeled with TMT 10-Plex, then analyze...
ORGANISM(S): Dunaliella Tertiolecta (ncbitaxon:3047) Dunaliella Cf. Bardawil Chpd1 (ncbitaxon:1227098) 
2024-11-20 | MSV000096479 | MassIVE
ProteomicsChlamydomonas reinhardtii responses to Fe-excess, Fe-deficiency, and Fe-limitation in either photoautotrophic or mixotrophic growth
A systems level analysis of Chlamydomonas reinhardtii grown photoautotrophically or mixotrophically with a reduced carbon source, acetate, under four different defined Fe stages of Fe-replete, Fe-deficient, Fe-limited, or Fe-excess. Samples were digested with trypsin, labeled with TMT 10-Plex, then ...
ORGANISM(S): Chlamydomonas Reinhardtii (ncbitaxon:3055) 
2024-11-20 | MSV000096475 | MassIVE
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