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Proteomic characterization of a cyanobacterial micorbial community isolated from a merimetic lake
ORGANISM(S): Synechocystis sp. PCC 6803
Dunaliella salina and Dunaliella tertiolecta are extremophile, marine algae that can survive in very low Fe conditions. In this study, we used TMT-proteomics to compare the Fe starvation responses to the Fe replete responses. Samples were digested with trypsin, labeled with TMT 10-Plex, then analyze...
ORGANISM(S): Dunaliella Tertiolecta (ncbitaxon:3047) Dunaliella Cf. Bardawil Chpd1 (ncbitaxon:1227098)
A systems level analysis of Chlamydomonas reinhardtii grown photoautotrophically or mixotrophically with a reduced carbon source, acetate, under four different defined Fe stages of Fe-replete, Fe-deficient, Fe-limited, or Fe-excess. Samples were digested with trypsin, labeled with TMT 10-Plex, then ...
ORGANISM(S): Chlamydomonas Reinhardtii (ncbitaxon:3055)
Human fecal communities were dosed with either choline, carnitine, butyrobetaine, or glycine betaine to measure the microbial response to quaternary amine addition. Samples were digested with trypsin, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.
ORGANISM(S): Unclassified Bacteria (ncbitaxon:2323)
A collection of MS/MS data 112 microbial species. #BiodiversityLibrary
ORGANISM(S): Pseudonocardia Sp. (ncbitaxon:60912) Bacillus Anthracis Str. Ames (ncbitaxon:198094) Caulobacter Crescentus Cb15 (ncbitaxon:190650) Opitutaceae Bacterium Tav5 (ncbitaxon:794903) Enterobacter Cloacae Scf1 (ncbitaxon:701347) Heliobacterium Modesticaldum (ncbitaxon:35701) Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s (ncbitaxon:588858) Bacillus Subtilis Subsp. Subtilis Str. 168 (ncbitaxon:224308) Shewanella Sp. Ana-3 (ncbitaxon:94122) Sinorhizobium Meliloti 1021 (ncbitaxon:266834) Cyanothece Sp. Atcc 51142 (ncbitaxon:43989) Escherichia Coli Bl21 (ncbitaxon:511693) Diplosphaera Colitermitum Tav2 (ncbitaxon:278957) Anaplasma Phagocytophilum (ncbitaxon:948) Chloroflexus Aurantiacus (ncbitaxon:1108) Yersinia Pestis Co92 (ncbitaxon:214092) Yersinia Pseudotuberculosis Ip 32953 (ncbitaxon:273123) Syntrophobacter Fumaroxidans (ncbitaxon:119484) Saccharomonospora Viridis Dsm 43017 (ncbitaxon:471857) Brachybacterium Faecium Dsm 4810 (ncbitaxon:446465) Cenarchaeum Symbiosum (ncbitaxon:46770) Chloracidobacterium Thermophilum (ncbitaxon:458033) Acidiphilium Cryptum Jf-5 (ncbitaxon:349163) Geobacter Sulfurreducens Pca (ncbitaxon:243231) Nakamurella Multipartita Dsm 44233 (ncbitaxon:479431) Sulfolobus Acidocaldarius Dsm 639 (ncbitaxon:330779) Desulfovibrio Desulfuricans Nd132 (ncbitaxon:641491) Haloferax Volcanii (ncbitaxon:2246) Synechococcus Sp. Pcc 7002 (ncbitaxon:32049) Fibrobacter Succinogenes Subsp. Succinogenes S85 (ncbitaxon:59374) Sinorhizobium Medicae (ncbitaxon:110321) Deinococcus Radiodurans R1 (ncbitaxon:243230) Shewanella Sp. Mr-7 (ncbitaxon:60481) Cellulomonas Flavigena Dsm 20109 (ncbitaxon:446466) Mycobacterium Tuberculosis H37rv (ncbitaxon:83332) Chlorobaculum Tepidum (ncbitaxon:1097) Kosmotoga Olearia Tbf 19.5.1 (ncbitaxon:521045) Shewanella Frigidimarina Ncimb 400 (ncbitaxon:318167) Shewanella Putrefaciens 200 (ncbitaxon:399804) Prochlorococcus Marinus Subsp. Pastoris Str. Ccmp1986 (ncbitaxon:59919) Shewanella Baltica Os185 (ncbitaxon:402882) Hungateiclostridium Thermocellum (ncbitaxon:1515) Thiocapsa Marina (ncbitaxon:244573) Burkholderia Mallei (ncbitaxon:13373) Thermotoga Maritima (ncbitaxon:2336) Novosphingobium Aromaticivorans (ncbitaxon:48935) Arthrobacter Sp. Fb24 (ncbitaxon:290399) Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 (ncbitaxon:99287) Xylanimonas Cellulosilytica Dsm 15894 (ncbitaxon:446471) Halorhabdus Utahensis Dsm 12940 (ncbitaxon:519442) Yersinia Enterocolitica (ncbitaxon:630) Thermosynechococcus Elongatus Bp-1 (ncbitaxon:197221) Geobacter Bemidjiensis Bem (ncbitaxon:404380) Kineococcus Radiotolerans Srs30216 (ncbitaxon:266940) Shewanella Oneidensis Mr-1 (ncbitaxon:211586) Delta Proteobacterium Naphs2 (ncbitaxon:88274) Desulfovibrio Vulgaris Str. Hildenborough (ncbitaxon:882) Ralstonia Pickettii (ncbitaxon:329) Ehrlichia Chaffeensis (ncbitaxon:945) Rhodobacter Capsulatus Sb 1003 (ncbitaxon:272942) Escherichia Coli Str. K-12 Substr. Mg1655 (ncbitaxon:511145) Rhodobacter Sphaeroides 2.4.1 (ncbitaxon:272943) Halogeometricum Borinquense Dsm 11551 (ncbitaxon:469382) Anabaena Variabilis (ncbitaxon:1172) Bartonella Henselae Str. Houston-1 (ncbitaxon:283166) Dethiosulfovibrio Peptidovorans Dsm 11002 (ncbitaxon:469381) Synechocystis Sp. Pcc 6803 (ncbitaxon:1148) Shewanella Loihica Pv-4 (ncbitaxon:323850) Geobacter Metallireducens Gs-15 (ncbitaxon:269799) Shewanella Baltica Os195 (ncbitaxon:399599) Roseiflexus Castenholzii (ncbitaxon:120962) Opitutaceae Bacterium Tav1 (ncbitaxon:278956) Borrelia Burgdorferi B31 (ncbitaxon:224326) Pseudomonas Aeruginosa Pao1 (ncbitaxon:208964) Sanguibacter Keddieii Dsm 10542 (ncbitaxon:446469) Methanosarcina Barkeri (ncbitaxon:2208) Thermosynechococcus Sp. Nk55a Slackia Heliotrinireducens Dsm 20476 (ncbitaxon:471855) Cyanothece Sp. Pcc 7822 (ncbitaxon:497965) Thermobispora Bispora Dsm 43833 (ncbitaxon:469371) Rhodopseudomonas Palustris (ncbitaxon:1076) Cyanothece Sp. Pcc 8801 (ncbitaxon:41431) Cyanothece Sp. Pcc 7424 (ncbitaxon:65393) Desulfovibrio Desulfuricans (ncbitaxon:876) Escherichia Coli Rk4353 Shewanella Putrefaciens Cn-32 (ncbitaxon:319224) Yersinia Pestis Kim10+ (ncbitaxon:187410) Candidatus Pelagibacter Ubique Htcc1062 (ncbitaxon:335992) Methanospirillum Hungatei Jf-1 (ncbitaxon:323259) Cyanothece Sp. Atcc 51472 (ncbitaxon:860575) Shewanella Sp. W3-18-1 (ncbitaxon:351745) Stackebrandtia Nassauensis Dsm 44728 (ncbitaxon:446470) Cyanothece Sp. Pcc 8802 (ncbitaxon:395962) Cryptobacterium Curtum Dsm 15641 (ncbitaxon:469378) Shewanella Amazonensis Sb2b (ncbitaxon:326297) Nocardiopsis Dassonvillei Subsp. Dassonvillei Dsm 43111 (ncbitaxon:446468) Dehalococcoides Ethenogenes 195 (ncbitaxon:243164) Shewanella Denitrificans Os217 (ncbitaxon:318161) Anaeromyxobacter Dehalogenans (ncbitaxon:161493) Actinosynnema Mirum Dsm 43827 (ncbitaxon:446462) Shewanella Baltica Os223 (ncbitaxon:407976) Geobacter Uraniireducens (ncbitaxon:351604) Pseudomonas Fluorescens Pf0-1 (ncbitaxon:205922) Pelobacter Carbinolicus Dsm 2380 (ncbitaxon:338963) Salmonella Enterica Subsp. Enterica Serovar Typhi Str. Ty2 (ncbitaxon:209261) Bacillus Anthracis Str. Sterne (ncbitaxon:260799) Yersinia Pseudotuberculosis Pb1/+ (ncbitaxon:502801) Methylophilales Bacterium Htcc2181 (ncbitaxon:383631) Shewanella Sp. Mr-4 (ncbitaxon:60480) Shewanella Baltica Os155 (ncbitaxon:325240) Cyanothece Sp. Pcc 7425 (ncbitaxon:395961)
Investigation of the gene expression responses of Candidatus Pelagibacter ubique cultures to iron limitation in natural seawater media supplemented with a siderophore to chelate iron. Quantitative peptide mass spectrometry revealed that sfuC protein abundance increased 27-fold, despite an average de...
ORGANISM(S): Candidatus Pelagibacter Ubique (ncbitaxon:198252)
A systems level analysis of Chromochloris zofingiensis during copper, iron, and zinc deficiencies when grown photoautotrophically and mixotrophically in a revised TP medium with special K mineral nutrients.
ORGANISM(S): Chromochloris Zofingiensis (ncbitaxon:31302)
By knocking out genes encoding specific arogenate dehydrase (ADT) enzymes in Arabidopsis, variable reductions in lignin can be achieved. To understand how ADT composition affects plant phenotypes and biomolecular systems, we successfully constructed single and multiple ADT knockout (KO) mutants in A...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702)
Leaf-cutter ants use fresh plant material to cultivate an obligate mutualistic fungus Leucoagaricus gongylophorus in specialized fungus gardens to access and transform nutrients from plant biomass that would otherwise be unavailable to the ants. Here, we evaluated the lipidomic differences between t...
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479)
Metaproteomic data for Rodriguez-Ramos, et al. interrogating microbial and viral communities of hyporheic river sediments within the Columbia River. Samples were digested with trypsin, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479)