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Proteomicsphosphoproteome of hippocampus after focal cerebral ischemia 1.5 h and reperfusion 24 h in mice
We obtained the profiles of neuronal phosphoproteome after cerebral ischemia and reperfusion by isolating mice hippocampus. Hippocampus combined from either nine sham or nine focal cerebral ischemia 1.5 h and reperfusion 24 h (IR) mice were lysed, digested, labeled with different TMT tags, then pool...
ORGANISM(S): Mus musculus (Mouse) 
2024-02-15 | PXD033851 | Pride
Phosphoproteome  hippocampus  cerebral ischemia and reperfusion 
ProteomicsStructure of Cyanobacterial Phycobilisome Core Revealed by Structural Modeling and Chemical Cross-linking
In cyanobacteria and red algae, the structural basis dictating efficient excitation energy transfer from the phycobilisome (PBS) antenna complex to the reaction centers (RCs) remains unclear. PBS has several peripheral rods and a central core, which binds to the thylakoid membrane, allowing energy c...
ORGANISM(S): Synechocystis sp. PCC 6803 substr. GT-S 
2021-09-09 | PXD017873 | Pride
Phycobilisome core structure I-tasser Mass spectrometry Phycobilisome Protein structure prediction Protein cross-linking Photosynthesis   
ProteomicsRevisiting high resolution crystal structure of Phormidium rubidum phycocyanin using X-ray and mass spectrometry
X-ray crystolography structure deconvolution in combination with mass spectrometry sequencing
ORGANISM(S): Phormidium rubidum A09DM 
2021-09-09 | PXD017229 | Pride
Phormidium_pc sequence 
UnknownResponse Patterns and Mechanisms of Seed Germination and Mortality of Common Plants in Subalpine Wet Meadows to In Situ Burial.
Not available
S-EPMC12525858 | biostudies-literature
ProteomicsXL-MS Characterization of spinach Photosystem II Assembly
Cross-linking mass spectrometry was used to determine the collective binding/stabilization of the TLP18.3 and Psb27 proteins to the luminal PSII CP43 protein. This pipeline also discovered the structural location of a Rubredoxin protein on the stromal side of PSII.
ORGANISM(S): Spinacia oleracea 
2026-04-27 | PXD073794 | Pride
Redox regulation. photoprotection Photosystem ii assembly Cross-linking mass spectrometry Psb32 Xl-ms Tlp18.3 Psb27 Rubredoxins 
ProteomicsPhotosystem II assembly No-reaction center (NRC) complex
LC-MS/MS identification of small subunit peptides of Photosystem II assembly intermediate (NRC) with/without trypsin digestion. Peptide sequence identification with HCD fragmentation using Q-Exactive plus mass spectrometer (Thermo-Fisher)
ORGANISM(S): Synechocystis sp. PCC 6803 
2019-10-14 | PXD013406 | Pride
Membrane protein complex Photosystem ii Assembly 
UnknownmiR-628 Promotes Burn-Induced Skeletal Muscle Atrophy via Targeting IRS1.
Not available
S-EPMC5069443 | biostudies-literature
MetabolomicsNon-targeted metabolomics reveals diagnostic biomarker in the plasma of patients with lung cancer

Lung cancer are malignant tumors with high incidence and mortality rates, and a 5-year survival rate that depends on the stage at the time of diagnosis. Screening methods for lung cancer are becoming increasingly diverse, but existing approaches lack sensitivity or specificity for early lesions, ...

2025-09-13 | MTBLS12985 | MetaboLights
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