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ProteomicsFAIMS-GPF XL-MS: crosslinking-mass spectrometry based on gas-phase fractionation
Protein-protein interactions (PPIs) underpin nearly all cellular processes; therefore, mapping PPI and protein-protein association networks is critical for understanding how biological systems function in health and disease. However, many functionally relevant PPIs are transient and mediated by weak...
ORGANISM(S): Homo sapiens (Human) 
2026-05-27 | PXD064228 | Pride
Faims Cross-linking mass spectrometry Structural biology Interactomics 
ProteomicsCross-ID: An Interactive Platform for in-depth Analysis and Visualization of Complex XL-MS Driven Protein Interaction Networks
Software platform dedicated to XL-MS interactive data analysis and visualization
ORGANISM(S): Bos taurus (Bovine) 
2019-01-02 | PXD011077 | Pride
Proteome discoverer Xl-ms Tmt Visualization 
UnknownAn algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics.
Not available
S-EPMC11256928 | biostudies-literature
UnknownRawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control.
Not available
S-EPMC11301677 | biostudies-literature
UnknownOpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS.
Not available
S-EPMC7710140 | biostudies-literature
ProteomicsIdentification of TDP-43 - TAU interactions by XL-MS
Identification of TDP-43 - TAU interactions by XL-MS (DSS). The interactions were identified in for equimolar amount of TDP-43 - TAU and, as control, TDP-43 and MBP. After 30 minutes from the induction of phase separation, samples were either analyzed (bulk condition) or subjected to centrifugation ...
ORGANISM(S): Homo sapiens (Human) 
2025-08-25 | PXD063858 | Pride
Xl-ms Tau Tdp-43 
ProteomicsXL-MS analysis of human tyrosine hydroxylase
Tyrosine hydroxylase (TH) is a highly regulated enzyme that catalyses the rate-limiting step in the biosynthesis of dopamine (DA) and other catecholamines. Mutations and dysfunction in this enzyme lead to DA deficiency and parkinsonisms of different severity. An understanding of TH deficiency at the...
ORGANISM(S): Homo sapiens (Human) 
2021-12-22 | PXD024519 | Pride
Xl-ms Dopamine Tyrosine hydroxylase Bs3 
UnknownDSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples.
Not available
S-EPMC11296914 | biostudies-literature
ProteomicsIn Situ Cross-linking Based Co-Fractionation Mass Spectrometry (XL-CoFrac-MS)
We developed an in situ cross-linking coupled reversed-phase liquid chromatography-based co-fractionation mass spectrometry (XL-CoFrac-MS) platform to analyze drug-induced protein complex changes. A software tool, ChromaQuant, was built to automate chromatographic peak quantification. Using RS4;11 l...
ORGANISM(S): Homo Sapiens 
PXD067673 |
ProteomicsHuman Mitochondrial NFS1-FXN XL LS-MS/MS
Frataxin (FXN) is involved in mitochondrial iron-sulfur (Fe-S) cluster biogenesis and serves to accelerate Fe-S cluster formation. FXN deficiency is associated with Friedreich ataxia, a neurodegenerative disease. Using chemical cross-linking (XL) accompanied with LC-MS/MS, we studied the the interac...
ORGANISM(S): Homo sapiens (Human) 
2018-07-11 | PXD006928 | Pride
Mitochondria Iron-sulfur cluster Xl Lc-ms/ms 
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