Live-cell analysis

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Unknown (3189)
Genomics (919)
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Methylation profiling (5)
Genomic (3)
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Organisms

Homo sapiens (463)
Mus musculus (315)
Caenorhabditis elegans (133)
Danio rerio (24)
Drosophila melanogaster (12)
Macaca mulatta (9)
Sus scrofa (9)
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Entamoeba histolytica (7)
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Mycobacterium avium subsp. paratuberculosis K-10 (4)
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Macaca fascicularis (3)
mixed sample (3)
Bathyergus suillus (2)
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Xenopus laevis (2)
Schistosoma mansoni (2)
Ovis aries (2)
Plasmodium falciparum (2)
Methanobrevibacter ruminantium (1)
Papio cynocephalus (1)
Oikopleura dioica (1)
Amphimedon queenslandica (1)
Trichomonas vaginalis (1)

Organisms

Mus musculus (325)
Homo sapiens (285)
Danio rerio (23)
Sus scrofa (8)
Drosophila melanogaster (6)
Macaca mulatta (6)
Gallus gallus (5)
Saccharomyces cerevisiae (4)
Arabidopsis thaliana (3)
Mycobacterium avium subsp. paratuberculosis K-10 (2)
Pseudomonas aeruginosa PAO1 (2)
Bos taurus (2)
unidentified (2)
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Mustela putorius furo (1)
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Marmota monax (1)
Aurantiochytrium limacinum ATCC MYA-1381 (1)
Drosophila ananassae (1)
Agrobacterium tumefaciens (1)
Peromyscus maniculatus (1)
Mesocricetus auratus (1)
Mesembryanthemum crystallinum (1)
Ciona robusta (1)

Repository

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Disease free (11)
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Acute leukemia (1)
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Cockayne syndrome (1)
Dengue disease (1)
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Lung cancer (1)
Multiple myeloma (1)
Myelodysplastic syndrome (1)
Osteosarcoma (1)
Parasitic helminthiasis infectious disease (1)
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Relapsing-remitting multiple sclerosis (1)

Technology Type

Mass Spectrometry (214)
Shotgun proteomics (93)
Bottom-up proteomics (58)
Data-dependent acquisition (30)
Affinity purification coupled with mass spectrometry proteomics (26)
Mass spectrometry (22)
Data-independent acquisition (22)
Gel-based experiment (12)
Mass spectrometry assay (10)
SWATH MS (10)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Top-down proteomics (4)
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SRM/MRM (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Cellarium (1)
Fluorescence imaging (1)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina NovaSeq 6000 (92)
NextSeq 500 (57)
Illumina HiSeq 4000 (42)
Illumina HiSeq 2500 (21)
Illumina HiSeq 2000 (13)
Illumina NovaSeq X (10)
NextSeq 2000 (9)
NextSeq 550 (5)
Illumina MiSeq (4)
10x Chromium Controller (3)
NextSeq 1000 (3)
Illumina HiSeq 1500 (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
Bio-Rad CFX96 Real-time System (2)
BD LSRFortessa (2)
MA900, Sony (2)
10X Chromium Controller (2)
DNBSEQ-G400 (2)
Illumina HiSeq 3000 (2)
Digital Alliance of Canada (1)
AAV-CRISPR (1)
10X Dual Index Kit (1)
10X Chromium Next GEM Single-Cell 3' Kit v3.1 (1)
Bravo automated liquid handling robot station (Agilent) (1)
BD Rhapsody Sequence Analysis Pipeline (1)
Aurora Cytek Cs 5L (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)

Publication Date

2025 (138)
2026 (120)
2013 (111)
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2023 (95)
2022 (94)
2010 (90)
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2020 (70)
2015 (61)
2014 (56)
2012 (52)
2016 (47)
2019 (42)
2011 (40)
2018 (39)
2017 (24)
2009 (16)
2008 (12)
2005 (8)
2007 (5)
2006 (5)
2004 (1)
2003 (1)

UNIPROT ID/AC

P51149 (1)
O95257 (1)
P24522 (1)
O75293 (1)
P20339 (1)
P38936 (1)
Q08828 (1)
P63092 (1)
P54750 (1)
Q5T5Y4 (1)
O14727 (1)
P99999 (1)
P55211 (1)
Q07812 (1)
P10415 (1)
Q9NR28 (1)
P62988 (1)
P98170 (1)
P55212 (1)
P55957 (1)
P42574 (1)
Q14790 (1)
O15519 (1)
O14763 (1)
P50591 (1)
P09874 (1)
P17612 (1)
Q13315 (1)
Q16539 (1)
P04637 (1)

CHEBI ID

CHEBI:15741 (11)
CHEBI:15428 (10)
CHEBI:32816 (10)
CHEBI:16027 (10)
CHEBI:30769 (10)
CHEBI:16708 (9)
CHEBI:28842 (9)
CHEBI:6650 (9)
CHEBI:18012 (9)
CHEBI:16235 (8)
CHEBI:15891 (8)
CHEBI:30915 (8)
CHEBI:16113 (7)
CHEBI:17553 (7)
CHEBI:28875 (7)
CHEBI:17148 (7)
CHEBI:16610 (7)
CHEBI:17154 (7)
CHEBI:17115 (7)
CHEBI:15422 (5)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:16991 (2)
CHEBI:35868 (1)
CHEBI:35610 (1)
CHEBI:25000 (1)
CHEBI:70727 (1)
CHEBI:63632 (1)
CHEBI:26523 (1)
CHEBI:17489 (1)

Metabolite Name

Uracil (6)
Thymine (6)
Methionine (5)
Taurine (5)
Adenosine (5)
Hypoxanthine (5)
N6,N6,N6-Trimethyl-L-lysine (4)
Adenine (4)
Glycine (4)
Thiamine (4)
Putrescine (4)
Succinic acid (4)
Acetylcholine (4)
Choline (4)
Fumaric acid (4)
Nonanoic acid (4)
Citric acid (4)
Stearic acid (4)
Malic acid (4)
Oleamide (4)
Serine (4)
Spermidine (4)
N-Acetylputrescine (4)
Isoleucine (4)
Glucose (4)
Adenine (4)
Glutamic acid (4)
Myristic acid (4)
Aspartic acid (4)
Cytidine (4)

First Public Date

2025 (134)
2026 (113)
2024 (104)
2023 (97)
2022 (80)
2021 (65)
2020 (52)
2019 (36)
2014 (36)
2018 (30)
2017 (22)
2015 (14)
2016 (11)
2013 (6)

Modelling Approach

Ordinary differential equation model (5)
Logical model (1)

Study status

Not yet recruiting (1)

Lab affiliation

Technical University Munich, Faculty of Medicine, Institute of Virology, Viral Immunopathology, Schneckenburger Str. 8, D-81675 Munich, Germany (4)
Crick-GSK LinkLabs, UK (3)
Institute of Clinical Chemistry, University Medical Center Goettingen (3)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
Cellzome (2)
Charles University, Faculty of Pharmacy in Hradec Králové Department of Analytical Chemistry Akademika Heyrovského 1203/8 500 05 Hradec Králové, Czech Republic (2)
Functional Proteomics, ICR (2)
MRC Toxicology Unit, University of Cambridge (2)
School of Life Sciences, Queens Medical Centre, University of Nottingham, Nottingham, NG7 2UH (2)
Shanghai Institute of Materia Medica (2)
Shenyang Agricultural University (2)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (2)
1 Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States 2 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, United States (1)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
1Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium (1)
1Department of Chemistry & Biochemistry, University of Maryland, College Park, MD 20742 (1)
1Université Libre de Bruxelles, Laboratory of Stem Cells and Cancer, Brussels B-1070, Belgium. 2WELBIO, Université Libre de Bruxelles, Brussels B-1070, Belgium (1)
Aalborg University Denmark (1)
Assistant Profssor, School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Beijing Bio-Tech Pack Technology Company Ltd. (1)
BioOrganique Mass Spectrometry Lab (LSMBO), Institut Pluridisciplinaire hubert Curien (IPHC) UMR7178, CNRS, University of Strasbourg (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Broad Institute (1)
CIISA - Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Alto da Ajuda, 1300-477 Lisboa, Portugal. (1)
Caltech Division of Chemistry and Chemical Engineering (1)
Carnegie Mass Spectrometry Facility (1)
Cell biology, neurobiology and biophysics, Utrecht University, Utrecht, Netherlands (1)
Cellular-Structural Biology Lab. IBR-CONICET (1)

IsPrivate

False (6)

Submitter Keywords

TransQST (1)

Classification

bacteria (8)
viruses (1)
protozoa (1)

Study type

Transcription profiling by array (233)
RNA-seq of coding RNA from single cells (149)
RNA-seq of coding RNA (87)
ChIP-chip by tiling array (77)
ChIP-seq (71)
Unknown experiment type (12)
Animal - Single-cell sequencing (7)
Comparative genomic hybridization by array (7)
ATAC-seq (7)
RNA-seq of total RNA (7)
Methylation profiling by high throughput sequencing (6)
Cell line - High-throughput sequencing (5)
DNA-seq (5)
Human - High-throughput sequencing (4)
Methylation profiling by array (4)
CUT&RUN (4)
RNA-seq of non coding RNA (4)
Cell line - Single-cell sequencing (3)
Differential (3)
Human - Single-cell sequencing (3)
ScATAC-seq (3)
Single nucleus RNA sequencing (3)
Baseline (2)
High-throughput sequencing (2)
Genotyping by array (2)
MicroRNA profiling by array (2)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)

Release Date

2025 (385)
2022 (343)
2024 (325)
2023 (322)
2021 (308)
2020 (259)
2018 (222)
2019 (217)
2016 (197)
2015 (196)
2013 (171)
2017 (165)
2014 (145)
2010 (141)
2012 (120)
2026 (95)
2011 (95)
2009 (61)
2008 (51)
2007 (26)
2005 (26)
2006 (21)
2004 (6)
2003 (6)
2002 (4)
2000 (4)
2001 (1)
1998 (1)

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Single-cell thiol profiling enabled by live-cell labeling reveals metabolic heterogeneity in ferroptosis

Raw data of both bulk and single-cell metabolomics. It includes all MS, LC-MS and LC-MS/MS raw data associated with the article 'Single-cell thiol profiling enabled by live-cell labeling reveals metabolic heterogeneity in ferroptosis'.

2026-02-14 | MTBLS13900 | MetaboLights

Live-seq for live cell transcriptome profiling

PRJNA591913 | ENA

Untargeted metabolomic analysis of human milk from healthy mothers reveals drivers of metabolite variability.

Understanding the human milk metabolome can help inform infant nutrition and health. Untargeted metabolomics was used to study breast milk from 31 healthy participants to assess the shared metabolites in milk from participants with various backgrounds and understand how different demographic, health...

2024-10-04 | MTBLS2419 | MetaboLights

Live-cell transcriptomics with engineered virus-like particles

PRJNA1303199 | ENA

Live-cell transcriptomics with engineered virus-like particles [Amplicon]

PRJNA1302489 | ENA

Multiomic analysis reveals that polyamines alter G. vaginalis-induced cervicovaginal epithelial cell dysfunction

An anaerobe-dominant, Lactobacillus-deplete cervicovaginal microbiome is associated with adverse reproductive outcomes. Gardnerella vaginalis, a cervicovaginal anaerobe, alters cervicovaginal epithelial cell function, resulting in immune activation and barrier breakdow...

2026-02-10 | MTBLS13885 | MetaboLights

Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics.

Not available

S-EPMC5316103 | biostudies-literature

Live-cell transcriptomics with engineered virus-like particles [RNA-seq: Single cell, Minibulk]

PRJNA1519968 | ENA

Single-cell Proteomics of Developing Cells in Live Vertebrate Embryos by Microprobe High-Resolution Mass Spectrometry

In this work, we developed a microprobe capillary electrophoresis high-resolution mass spectrometry approach to identify proteins in single identified cells in live embryos of the South African clawed frog (Xenopus laevis) and also zebrafish. We used a pulled borosilicate capillary to aspirate a cal...

ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) Xenopus laevis (African clawed frog)

2020-05-26 | PXD006905 | Pride

Effect of rBC2LCN on human embryonic stem cells

We show a recombinant lectin probe, rBC2LCN, is a new tool for fluorescence-based imaging and flow cytometry analysis of human pluripotent stem cells, as an alternative to conventional pluripotent maker antibodies. Live or fixed colonies of both human embryonic stem cells and induced pluripotent ste...

ORGANISM(S): Homo sapiens

2015-12-09 | E-GEOD-42976 | biostudies-arrayexpress

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