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TranscriptomicsHepatic transcriptomic analysis of inter-family variability in flesh n-3 long-chain polyunsaturated fatty acid content in Atlantic salmon
Liver transcriptomes of Atlantic salmon families with contrasting flesh n-3 LC-PUFA profiles, and all fed the same 100% vegetable oil replacement diet, were compared by microarray analysis (Agilent oligoarray platform). The objective was to identify gene pathways and molecular mechanisms which might...
ORGANISM(S): Salmo salar 
2011-09-15 | E-TABM-1204 | biostudies-arrayexpress
ProteomicsMetaomic study on the ecophysiological cascade underlaying seasonal N2O emissions
Nina Roothans et al.(2024) combined long-term, metagenomically resolved metaproteomics and ex situ kinetic characterizations to elucidate the ecophysiology of an N2O-emitting wastewater treatment plant community. The integration of these data enabled the identification of a cascade of environmental ...
ORGANISM(S): Microthrix Candidatus Accumulibacter phosphatis Nitrosomonas sp. Nitrospira sp. 
2025-02-21 | PXD051095 | Pride
Wastewater treatment plants Microbes Shotgun proteomics Metaproteomics 
TranscriptomicsSlug-dependent upregulation of L1CAM is responsible for the increased invasion potential of pancreatic cancer cells following long-term 5-FU-treatment
In pancreatic cancer the survival rate is low, as the available treatment options usually only extend survival and seldom produce a cure. Drug resistance and disease reoccurrence is the typical reason for death after cancer diagnosis. 5-Fluorouracil (5-FU) is the main chemostatic used in first line ...
ORGANISM(S): Homo sapiens 
2015-08-11 | E-GEOD-58386 | biostudies-arrayexpress
TranscriptomicsTranscriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development [RNA-Seq]
Long non-coding RNAs (lncRNAs) have emerged as critical regulators of gene expression and chromatin modifications, with important functions in development and disease. Here we sought to identify and functionally characterize lncRNAs critical for vascular vertebrate development with significant conse...
ORGANISM(S): Homo sapiens 
2015-05-15 | E-GEOD-54968 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat esophagus treated with N-nitrosomethylbenzylamine to identify the effects of phenylethyl isothiocyanate on N-nitrosomethylbenzylamine-induced cytotoxicity
To date, there is little information on early molecular events in the development of N-nitrosomethylbenzylamine (NMBA) induced esophageal tumorigenesis and of the effects of chemopreventive agents on these events. In this study, we identified genes in rat esophagus that were differentially expressed...
ORGANISM(S): Rattus norvegicus 
2008-06-15 | E-GEOD-6917 | biostudies-arrayexpress
TranscriptomicsArray CGH of Mexican Patient Isolates and BCS100 Strain
Array CGH of human H. pylori isolates from natrually infected Mexican patients and BCS-100 strain used for experimental infection of humans which is labeled as OVX-34 in this sample set(Graham et al., 2004, Gut, 53:1235-1243). Each Mexican isolate has a three digit number indicating the patient, a l...
ORGANISM(S): Helicobacter pylori 
2007-08-08 | E-GEOD-7618 | biostudies-arrayexpress
TranscriptomicsGenome-wide identification of rat long non-coding RNAs (microarray)
In the current study, we have focused on a distinct group of non-coding elements, lncRNA, and profiled renal tissues from three different inbred rat strains. We chose the three strains S, SHR and R for the main purpose of cataloging lncRNA annotations from the most widely used rat models of cardiov...
ORGANISM(S): Rattus norvegicus 
2014-12-10 | E-GEOD-59165 | biostudies-arrayexpress
TranscriptomicsEmory_Pediatric_Strains_1
Array CGH analysis of Helicobacter pylori strains isolated from a North American cohort of symptomatic pediatric patients. Keywords: genotyping_design A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Patients enrolled ...
ORGANISM(S): Helicobacter pylori 
2009-11-04 | E-GEOD-13317 | biostudies-arrayexpress
no omics definedTranscription profiling of whole fetal rat testes at gestational days 15, 17 and 19 treated in utero with dibutylphthalate (DBP)
An experiment was performed to assess the effects on rats of in utero dibutylphthalate (DBP)-treatment on the transcriptome of whole fetal testes at gestational days 15, 17 and 19.
ORGANISM(S): Rattus norvegicus 
2007-04-05 | E-TABM-200 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of chord and interstitial regions of rat testes at gestational day 19 treated in utero with dibutylphthalate (DBP)
An experiment was performed to assess the effects on rats of in utero dibutylphthalate (DBP)-treatment on the transcriptome of whole fetal testes at gestational day 19.
ORGANISM(S): Rattus norvegicus 
2007-04-05 | E-TABM-201 | biostudies-arrayexpress
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