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Unknown (16030)
Transcriptomics (383)
Proteomics (228)
Genomics (63)
Metabolomics (23)
Other (1)

Organisms

Homo sapiens (184)
Mus musculus (117)
Bordetella bronchiseptica (18)
Saccharomyces cerevisiae (16)
Arabidopsis thaliana (15)
Daphnia pulex (12)
Rattus norvegicus (11)
Schizosaccharomyces pombe (6)
Neurospora crassa (5)
Solanum lycopersicum (5)
Sus scrofa (5)
Nicotiana tabacum (4)
Zea mays (3)
Bordetella pertussis (3)
Glycine max (3)
Manihot esculenta (2)
Lactococcus garvieae (2)
Phaeodactylum tricornutum (2)
Equus caballus (2)
Hordeum vulgare (2)
Plasmodium falciparum (2)
Gallus gallus (2)
Drosophila melanogaster (2)
Acomys cahirinus (1)
Rhizobium etli (1)
Cucurbita maxima (1)
Thalassiosira pseudonana CCMP1335 (1)
Heliconius melpomene melpomene (1)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (1)
Synechocystis sp. PCC 6803 (1)

Organisms

Sus scrofa (2)
Arabidopsis thaliana (2)
Danio rerio (1)

Repository

biostudies-arrayexpress (410)
pride (189)
EGA (28)
MetaboLights (22)
MassIVE (18)
PeptideAtlas (17)
ENA (7)
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geo (1)
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GPMDB (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (31)
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Disease

Disease free (6)
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Meniere's disease (3)
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Cardiovascular system disease (3)
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Obesity (2)
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Pancreatic cancer (2)
Myocardial ischemia (2)
Malignant neoplasm of ovary (2)
COVID-19 (2)
Acute erythroid leukemia (1)
Angioimmunoblastic T-cell lymphoma (1)
VAT - Ventilated associated tracheobronchitis (1)
Mock infected (1)
Cirrhosis (1)
Adenocarcinoma (1)
Normal (1)
Not Available (1)
Breast ductal adenoma (1)
Acute stress disorder (1)
Abdominal aortic aneurysm (1)
Salmonellosis (1)
Intestinal disease (1)
Alcohol dependence (1)
Mucolipidosis II alpha/beta (1)
Castration-resistant prostate carcinoma (1)

Technology Type

Mass Spectrometry (189)
Shotgun proteomics (88)
Bottom-up proteomics (45)
Affinity purification coupled with mass spectrometry proteomics (26)
Data-dependent acquisition (24)
Gel-based experiment (21)
Mass spectrometry (19)
SWATH MS (11)
Data-independent acquisition (7)
Top-down proteomics (7)
DiaPASEF (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Affinity proteomics (2)
SRM/MRM (2)
Illumina HiSeq 2000, Illumina HumanOmni5-Quad and exome sequencing, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
MSE (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
LTQ Orbitrap Velos (8)
Illumina HiSeq 2000 (6)
TripleTOF 5600 (6)
Orbitrap Fusion Lumos (5)
GenePix 4000B [Axon Instruments] (4)
Scanning hardware (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
LTQ Orbitrap (4)
Illumina HiSeq X (3)
MS:1000419 (3)
MS:1000044 (2)
MS:1000031 (2)
Thermo Fisher (1)
454 GS FLX+ (1)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
Axon GenePix 4000B scanning hardware (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
ITQ 1100 (1)
Instrument (1)
Q-Exactive-Plus mass spectrometer (1)
RSLCnano UHPLC/Q-Exactive (1)
SolariX (1)
TimsTOF Pro (1)
Orbitrap Exploris 480 (1)

Publication Date

2014 (79)
2012 (54)
2011 (51)
2015 (47)
2010 (47)
2025 (38)
2023 (37)
2013 (37)
2026 (33)
2024 (33)
2022 (31)
2016 (27)
2021 (25)
2009 (25)
2019 (20)
2020 (19)
2008 (19)
2018 (16)
2017 (8)
2007 (7)
2004 (3)
2006 (2)
2005 (2)

UNIPROT ID/AC

G1SVB3_RABIT (1)
A0A5F9C4L7_RABIT (1)
G1TKE5_RABIT (1)
G1T4D5_RABIT (1)
G1U8G0_RABIT (1)
G1SSN8_RABIT (1)
G1T4N8_RABIT (1)
G1SMH9_RABIT (1)
G1U2A1_RABIT (1)
G1U3Q6_RABIT (1)
A0A5F9CGP0_RABIT (1)
SAA2_RABIT (1)
G1T2S0_RABIT (1)
G1TDT3_RABIT (1)
CPNS1_RABIT (1)
G1T8H5_RABIT (1)
G1TL08_RABIT (1)
G1SZP6_RABIT (1)
A0A5F9CNA2_RABIT (1)
G1TKV1_RABIT (1)
G1TSW8_RABIT (1)
U3KM54_RABIT (1)
G1SDU8_RABIT (1)
G1SJQ2_RABIT (1)
A0A5F9D7S5_RABIT (1)
G1TEP2_RABIT (1)
G1U207_RABIT (1)
G1SPW1_RABIT (1)
G1SN00_RABIT (1)
G1TN29_RABIT (1)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000147251 (4)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (8)
CHEBI:30769 (7)
CHEBI:16828 (6)
CHEBI:16737 (6)
CHEBI:30776 (5)
CHEBI:28875 (5)
CHEBI:16610 (5)
CHEBI:17115 (5)
CHEBI:28716 (5)
CHEBI:17295 (5)
CHEBI:43355 (5)
CHEBI:18089 (5)
CHEBI:17859 (5)
CHEBI:15971 (5)
CHEBI:17650 (5)
CHEBI:17405 (5)
CHEBI:15891 (5)
CHEBI:17750 (5)
CHEBI:15756 (5)
CHEBI:16704 (5)
CHEBI:16335 (5)
CHEBI:32816 (5)
CHEBI:30915 (5)
CHEBI:15724 (4)
CHEBI:46905 (4)
CHEBI:18183 (4)
CHEBI:30746 (4)
CHEBI:17895 (4)
CHEBI:16643 (4)
CHEBI:15603 (4)

Metabolite Name

Betaine (4)
4-Guanidinobutyric acid (4)
Hypoxanthine (4)
Creatinine (4)
L-Histidine (4)
Choline (4)
3-Methylhistidine (3)
4-Pyridoxic acid (3)
Methionine (3)
Palmitic acid (3)
L-Tryptophan (3)
Adenosine (3)
Creatine (3)
L-Proline (3)
Taurine (3)
L-Arginine (3)
L-Phenylalanine (3)
L-Glutamine (3)
L-Leucine (3)
7,8-Dihydrobiopterin (2)
Folic acid (2)
Indole-3-pyruvic acid (2)
Hypotaurine (2)
Glutamate (2)
D-Mannitol (2)
Naringenin (2)
7-Ketodeoxycholic acid (2)
Prostaglandin I2 (2)
Trimethylamine N-oxide (2)
1-Methylnicotinamide (2)

First Public Date

2014 (3)
2024 (2)
2025 (1)
2023 (1)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (281)
RNA-seq of coding RNA (38)
ChIP-seq (27)
Comparative genomic hybridization by array (13)
RNA-seq of non coding RNA (9)
Transcription profiling by tiling array (8)
ChIP-chip by tiling array (6)
ChIP-chip by array (6)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Transcription profiling by RT-PCR (2)
Other (2)
Cell line - Single-cell sequencing (1)
Differential (1)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
Trajectory (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (2058)
2023 (1894)
2025 (1866)
2021 (1850)
2024 (1575)
2020 (1302)
2019 (1014)
2018 (832)
2017 (632)
2016 (622)
2015 (568)
2014 (446)
2012 (326)
2013 (323)
2026 (273)
2011 (242)
2010 (184)
2009 (145)
2008 (95)
2007 (54)
2006 (33)
2005 (28)
2004 (17)
2000 (15)
2002 (13)
2003 (12)
2001 (12)
1999 (5)
1998 (2)
1990 (1)

Lab affiliation

Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (7)
Dpt. of Immunobiology University of Lausanne (UNIL), Boveresses 155 CH-1066 Epalinges (4)
Proteomics - Bioinformatics (4)
Dept. of Laboratory Medicine, University of California, San Francisco, CA (3)
Vanderbilt University Department of Chemistry (3)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (3)
Structural Biology Group, European Synchrotron Radiation Facility (ESRF), Grenoble, France (2)
Department of Physical Therapy University of Florida (2)
WCAIR, School of Life Sciences, University of Dundee (2)
Centro de Investigaciones Biológicas Margarita Salas, CSIC, Madrid, Spain (2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
CIB-CSIC (Spanish Research Council) (2)
University of Toronto (2)
Carnegie Mass Spectrometry Facility (2)
Group Leader Cell&Developmental Biology John Innes Centre Norwich, UK (2)
Applied Proteomics Laboratory, Department of Biology, Maynooth University, Ireland. (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK. (1)
Laboratory of Cell Growth Control by Nutrients, Inserm U1151, Necker Enfants Malades Institute (INEM), Faculté de Médecine Paris Descartes, Leriche Building 14 Rue Maria Helena Vieira da Silva Paris 75014 France (1)
University of California San Diego, School of Biological Science, United States (1)
Mass Spectrometry for Biology Unit, CNRS USR 2000, Institut Pasteur, Paris, France. (1)
Microbial Physiology and Molecular Biology, Institute of Microbiology, University of Greifswald, Germany (1)
Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN (1)
Proteomics Unit (UCCTs), Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain (1)
Laboratorio de Proteómica Cardiovascular,Centro Nacional de Investigaciones Cardiovasculares Carlos III, Madrid,Spain (1)
Department of Dermatology, Stanford School of Medicine, Stanford University (1)
Centro Nacional de Investigaciones Cardiovasculares, 28029, Madrid, Spain (1)
Architecture et Réactivité de l’ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67084 Strasbourg, France (1)
Department of Pharmacology, University of Arizona College of Medicine, Tucson (1)
Lab Head Proteomics Unit - CNIC - Madrid, Spain (1)

Tags

xref:PubMed:18456903 (2)
xref:PubMed:37930995 (1)
xref:PubMed:37575968 (1)
xref:PubMed:39918953 (1)
xref:PubMed:34133931 (1)

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Global gene expression change in the cerebellum of Niemann-Pick disease type C mice with deletion of Ccl3 or Purkinje neuron-specific NPC1 rescue

Macrophage inflammatory protein 1alpha/CCL3 protein is a known pro-inflammatory cytokine that can mediate chemotaxis of monocytes and promote cell degranulation. Ccl3 gene expression is elevated in the CNS and visceral tissue of many lysosomal storage disorders. The deletion of Ccl3 in a mouse model...

ORGANISM(S): Mus musculus

2012-04-16 | E-GEOD-36119 | biostudies-arrayexpress

Multisystem inflammatory syndrome in children (MIS-C) serum proteomics

While fewer cases of severe Coronavirus Disease 2019 (COVID-19) are reported globally in children, a small proportion of SARS-CoV-2 infected children develop a novel pediatric febrile entity called multisystem inflammatory syndrome in children (MIS-C) that develops 2 to 5 weeks after initial SARS-Co...

ORGANISM(S): Homo sapiens (Human)

2021-09-29 | PXD025462 | Pride