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TranscriptomicsTranscriptome profiling for wild-type, single and double mutants for Nuclear Factor YA1 (nf-ya1) and hypernodulation phenotype (har1) mutants in roots of Lotus japonicus
Acting in a partially redundant manner, NF-Ys were shown previously to regulate bacterial infection, including selection of a superior rhizobial strain, and to participate in mediating nodule structure formation. However, the exact mechanism(s) by which these transcriptional factors exert their symb...
ORGANISM(S): Lotus japonicus 
2017-05-03 | E-MTAB-4970 | biostudies-arrayexpress
TranscriptomicsLotus japonicus-Alkaline
Lotus japonicus is a model legume broadly used to study transcriptome regulation under different stress conditions and microorganism interaction. Understanding how this model plant respond gainst alkaline stress will certainly help to develop more tolerant cultivars in economically important Lotus s...
ORGANISM(S): Lotus japonicus 
2014-03-25 | E-MTAB-2418 | biostudies-arrayexpress
ProteomicsA proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.)
Lotus (Nelumbo nucifera Gaertn) belongs to the family Nymphaeaceae, and is a popular aquatic vegetable that is rich in nutrients. It is widely cultivated in China, and many varieties of lotus are used for different purposes, suited to different climates, and consumed in different ways. Lotus is comm...
ORGANISM(S): Nelumbo nucifera subsp. nucifera 
2022-02-23 | PXD006883 | Pride
Adventitious root Leaf removal Protein Qpcr Lotus root Itraq 
ProteomicsDataset Lotus Japonicus root exudates
The present dataset is composed of Lotus japonicus root exudate samples under different nitrogen states: starved (no nitrogen), inorganic N (KNO3), symbiotic N (inoculation with M. loti), and inorganic/symbiotic (KNO3 + M. loti). The samples were analyzed by ultra-high-performance liquid chromatogra...
ORGANISM(S): Lotus Japonicus (ncbitaxon:34305) 
2023-05-22 | MSV000092000 | MassIVE
TranscriptomicsTranscription profiling of Lotus japonicus major organ systems including nodule and seed development
Lotus japonicus is a perennial legume with a small diploid genome that has been adopted as a model species for legume genetics and genomics. With the genome sequence as a backdrop (Sato et al. 2008), we have generated a gene expression atlas that provides a global view of gene expression in all majo...
ORGANISM(S): Lotus japonicus 
2010-12-22 | E-MEXP-1726 | biostudies-arrayexpress
ProteomicsLotus rhizome LC-MSMS - Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Nelumbo, a perennial aquatic herbage that belongs to the family of Nelumbonaceae, comprises two extant species: N. nucifera Gaertn. and N. lutea (Wild.) Pers. Based on a previous study, N. nucifera is distributed in over Asia and Northern Australia while N. lutea is found in North America and northe...
ORGANISM(S): Nelumbo nucifera (Sacred lotus) 
2019-11-12 | PXD010388 | Pride
Lc-msms Rhizome Lotus 
MetabolomicsPlant species richness promotes the decoupling of leaf and root defence traits while species-specific responses in physical and chemical defences are rare

The increased positive impact of plant diversity on ecosystem functioning over time is often attributed to the gradual accumulation of mutualists and dilution of antagonists in diverse plant communities. While increased plant diversity alters traits related to resource acquisition, it remains unc...

2025-02-13 | MTBLS8464 | MetaboLights
TranscriptomicsComparative transcriptomic analysis of Lotus japonicus leves and roots under symbiotic and non-symbiotic conditions.
Microarray transcriptomic analysis was carried out on Lotus japonicus plants grown either under purely symbiotic conditions (Mesorhizobium loti) or under non-symbiotic conditions (no inoculation and provided with NH4NO3).
ORGANISM(S): Lotus japonicus 
2020-07-02 | E-MTAB-8235 | biostudies-arrayexpress
TranscriptomicsCell-type specific transcriptome analysis in nodules of Lotus japonicus
Legume plants can establish symbiotic nitrogen fixation (SNF) with rhizobia mostly in root nodules, where rhizobia-infected cells are accompanied with uninfected cells in a mosaic pattern. Inside the mature nodules of legume, carbon and nitrogen nutrients between host plant cells and their resident ...
ORGANISM(S): Lotus japonicus 
2011-12-29 | E-GEOD-34753 | biostudies-arrayexpress
MetabolomicsUncovering the secrets of monoculture yield decline: Trade-offs between leaf and root chemical and physical defence traits in a grasslands experiment

Plant monocultures growing for extended periods face severe losses of productivity. This phenomenon, known as 'yield decline', is often caused by the accumulation of above- and below-ground plant antagonists. The effectiveness of plant defences against antagonists might help explain differences i...

2023-11-03 | MTBLS4286 | MetaboLights
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