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ProteomicsOnline alkaline-pH reverse phase nanoelectrospray-tandem mass spectrometry complements conventional low-pH method for global proteomic analysis
The global proteome analysis was limited by the identification of peptides with low abundance or specific physiochemical properties. Here, a one-dimensional online alkaline-pH reverse phase nanoelectrospray-tandem mass spectrometry (AlkalinepH-MS/MS) method was developed and optimized for global pro...
ORGANISM(S): Homo Sapiens 
2023-01-15 | PXD039453 |
TranscriptomicsTranscription profiling of human oesophageal cells stimulated with a low pH environment
Differential gene expression analysis of oesophageal cells stimulated with a low pH environment. Study designed to identify pathways involved in progression of gastro-oesophageal reflux disease through Barrett's oesophagus to adenocarcinoma. Identified many subsets of genes with involvement in patho...
ORGANISM(S): Homo sapiens 
2007-08-25 | E-GEOD-2144 | biostudies-arrayexpress
TranscriptomicsInfluence of oxygen limitation, absence of the cytochrome bc1 complex and low pH on global gene expression in Gluconobacter oxydans 621H using DNA microarray technology
The genome-wide transcriptional responses of the strictly aerobic -proteobacterium Gluconobacter oxydans 621H to oxygen limitation, to the absence of the cytochrome bc1 complex, and to low pH were studied using DNA microarray analyses. Oxygen limitation caused expression changes of 486 genes, repres...
ORGANISM(S): Gluconobacter oxydans 621H 
2012-03-23 | E-GEOD-34294 | biostudies-arrayexpress
ProteomicsIntact Protein TMT Labeling and 2D High-pH/Low-pH RP/RPLC-MS/MS
Optimization of intact protein TMT labeling and multidimensional high-pH/low-pH RP/RPLC-MS/MS. Application of this platform for quantification of proteoform-level abundance changes as a result of staursporine treatment in HeLa cells.
ORGANISM(S): Homo sapiens (Human) 
2026-08-13 | PXD078120 | Pride
Tmt labeling Top-down proteomics Multidimensional lc-ms 
TranscriptomicsCell-type, developmental stage, and whole root responses to low pH and sulfur deficiency
This SuperSeries is composed of the following subset Series: GSE30091: Expression analysis of the effect of protoplasting and sorting in roots exposed to low pH GSE30095: Expression analysis of root cell types after treatment with low pH GSE30096: Expression analysis of developmental stages of Arabi...
ORGANISM(S): Arabidopsis thaliana 
2011-11-23 | E-GEOD-30166 | biostudies-arrayexpress
GenomicsLophelia pertusa response to low pH
Lophelia pertusa response to low pH
PRJNA613691 | ENA
GenomicsMicrobial low pH Mn(II) oxidation
Microbial low pH Mn(II) oxidation
PRJEB11431 | ENA
GenomicsLow pH controls MondoA genome-wide binding.
Low pH controls MondoA genome-wide binding.
PRJNA515200 | ENA
ProteomicsLow pH-responsive proteins revealed by a 2-DE based MS approach and related physiological responses in Citrus leaves
After long-term low pH treatment, 2D electrophoresis and mass spectrum were conducted to investigate different proteiomic profile in Citrus sinensis and Citrus grandis leaves samples.
ORGANISM(S): Citrus maxima (Pomelo) (Citrus grandis) 
2018-10-16 | PXD010426 | Pride
Citrus grandis Citrus sinensis 2-de Leaves Proteomics Low ph 
GenomicsLow-pH concrete-associated microbial community
16S rRNA gene profiling of microbial communities associated with low-pH concrete environments
PRJNA1397031 | ENA
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