Ltq-orbitrap - OmicsDI

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Proteomics (5676)
Metabolomics (326)
Unknown (278)
Multiomics (145)
Other (30)
Genomics (8)
Transcriptomics (1)

Organisms

Homo sapiens (575)
Mus musculus (12)
unidentified (3)
Panama (2)
Viridiplantae (2)
Arabidopsis thaliana (2)
Maihueniopsis camachoi (2)
Streptomyces sp. MBT27 (2)
Angelica keiskei (1)
Bacillus velezensis (1)
Euphorbia dendroides (1)
Noxius (1)
Okeania hirsuta (1)
Oryza sativa (1)
Papio anubis (1)
Ribes nigrum (1)
Rivularia sp. (in: cyanobacteria) (1)
Schizosaccharomyces pombe (1)
Solanum lycopersicum (1)
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Streptomyces sp. (1)
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Dietzia sp. DQ12-45-1b (1)
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Listeria monocytogenes EGD (1)
Listeria monocytogenes EGD-e (1)
Stutzerimonas stutzeri (1)
Tetragenococcus halophilus (1)
Weissella confusa (1)

Organisms

Nematoda (1)
Pristionchus pacificus (1)
Mus musculus (1)
Homo sapiens (1)

Repository

pride (3677)
MassIVE (1256)
PeptideAtlas (752)
GNPS (220)
MetaboLights (103)
iProX (9)
ENA (8)
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NODE (4)
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geo (1)

Tissue

Cell culture (727)
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Epithelial cell (242)
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Plant cell (151)
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Digestive System (114)
Liver (89)
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Male Reproductive System (16)
Brain (12)
Liver (9)
Heart (7)
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Large Intestine (6)
Lung (6)
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Urine (4)
Breast (3)
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Urinary Bladder (2)
Cell line (1)
Stomach (1)
Prefrontal Cortex (1)

Disease

Breast cancer (100)
Disease free (97)
Colon cancer (52)
Cervix carcinoma (28)
Wounds and Injuries (24)
Colon adenocarcinoma (21)
Melanoma (21)
Prostate adenocarcinoma (21)
Rectum adenocarcinoma (21)
Acute leukemia (19)
Brain cancer (16)
Lung cancer (14)
Cardiovascular system disease (13)
Chagas disease (13)
Lymphoma (12)
Malignant neoplasm of ovary (12)
Parkinson's disease (12)
Influenza (11)
Malaria (10)
Type 2 diabetes mellitus (10)
Alzheimer's disease (9)
Trypanosomiasis (9)
Brain glioblastoma multiforme (8)
Colorectal Carcinoma (5)
Not Available (2)
Stomach cancer (1)
Alzheimer's Disease (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Non-small Cell Lung Carcinoma (1)
Serous Cystadenocarcinoma (1)

Technology Type

Mass Spectrometry (3677)
Shotgun proteomics (2273)
Affinity purification coupled with mass spectrometry proteomics (577)
Bottom-up proteomics (472)
Gel-based experiment (448)
Data-dependent acquisition (103)
Top-down proteomics (103)
Mass spectrometry (85)
Chemical cross-linking coupled with mass spectrometry proteomics (69)
SRM/MRM (32)
Mass spectrometry assay (18)
SWATH MS (10)
All-ion fragmentation (9)
Mass spectrometry imaging (8)
Affinity proteomics (7)
MSE (6)
HDMSE (4)
Data-independent acquisition (3)
Gel-free quantification method (3)
Immunopeptidomics (2)
Metaproteomics (2)
Proteogenomics (2)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Gel-based quantification method (1)
Glycoproteomics (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

LTQ Orbitrap Velos (855)
LTQ Orbitrap Elite (574)
LTQ Orbitrap (424)
LTQ Orbitrap XL (299)
Q Exactive (91)
LTQ Orbitrap Velos Pro (37)
LTQ Orbitrap Classic (Thermo Scientific) (30)
Q Exactive Plus (18)
LTQ Orbitrap Discovery (14)
LTQ Orbitrap Velos (Thermo Scientific) (12)
LTQ FT (7)
LTQ XL (7)
LTQ Velos ETD (5)
LTQ Orbitrap|1000449 (4)
LTQ Orbitrap Discovery (Thermo Scientific) (4)
LTQ Orbitrap XL (Thermo Scientific) (4)
Orbitrap Exploris 240 (4)
6520A Quadrupole Time-of-Flight LC/MS (3)
Q-Exactive (2)
LTQ-Orbitrap XL (2)
4800 Plus MALDI TOF/TOF (1)
6140 Quadrupole LC/MS (1)
6510 Quadrupole Time-of-Flight LC/MS (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
Agilent 6560 IM-QTOF MS (1)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA) (1)
LTQ Advantage Max spectrometer (1)
LTQ Orbitrap (Thermo Finnigan) (1)
LTQ Orbitrap Velos|1001742 (1)
LTQ Orbitrap velos pro ETD (Thermo Scientific Instrument model) (1)

UNIPROT ID/AC

3MG2_ECOLI (2)
3PASE_ECOLI (2)
511145.b2088 (2)
511145.b2394 (2)
511145.b3505 (2)
5DNU_ECOLI (2)
5FCL_ECOLI (2)
6PGL_ECOLI (2)
A2MG_ECOLI (2)
AAAT_ECOLI (2)
AAER_ECOLI (2)
AAS_ECOLI (2)
AAT_ECOLI (2)
ABDH_ECOLI (2)
ACCA_ECOLI (2)
ACCC_ECOLI (2)
ACCD_ECOLI (2)
ACDH_ECOLI (2)
ACEA_ECOLI (2)
ACEK_ECOLI (2)
ACFD_ECOLI (2)
ACKA_ECOLI (2)
ACNA_ECOLI (2)
ACNB_ECOLI (2)
ACPH_ECOLI (2)
ACPS_ECOLI (2)
ACPT_ECOLI (2)
ACP_ECOLI (2)
ACRA_ECOLI (2)
ACRB_ECOLI (2)

ENSEMBL ID

ENSG00000170477 (442)
ENSG00000229353 (178)
ENSG00000147251 (135)
ENSG00000247315 (91)
ENSG00000204131 (26)
ENSMUSP00000141097 (24)
ENSMUSG00000027651 (18)
ENSMUSG00000072849 (17)
ENSMUSG00000021039 (16)
ENSMUSG00000098557 (13)
ENSRNOG00000000185 (10)
ENSRNOG00000000186 (10)
ENSRNOG00000000386 (10)
ENSRNOG00000000826 (10)
ENSRNOG00000000903 (10)
ENSRNOG00000001211 (10)
ENSRNOG00000001254 (10)
ENSRNOG00000001440 (10)
ENSRNOG00000001442 (10)
ENSRNOG00000001770 (10)
ENSRNOG00000001797 (10)
ENSRNOG00000001889 (10)
ENSRNOG00000001991 (10)
ENSRNOG00000002115 (10)
ENSRNOG00000002210 (10)
ENSRNOG00000002301 (10)
ENSRNOG00000002393 (10)
ENSRNOG00000002394 (10)
ENSRNOG00000002636 (10)
ENSRNOG00000002643 (10)

CHEBI ID

CHEBI:16335 (34)
CHEBI:16704 (32)
CHEBI:27897 (31)
CHEBI:30769 (30)
CHEBI:17858 (27)
CHEBI:16695 (27)
CHEBI:29016 (27)
CHEBI:16264 (26)
CHEBI:18186 (26)
CHEBI:16811 (26)
CHEBI:17562 (26)
CHEBI:28044 (26)
CHEBI:7916 (26)
CHEBI:17368 (26)
CHEBI:25094 (25)
CHEBI:28300 (25)
CHEBI:15741 (25)
CHEBI:16027 (25)
CHEBI:16919 (25)
CHEBI:16680 (24)
CHEBI:22660 (24)
CHEBI:16708 (24)
CHEBI:16870 (24)
CHEBI:17268 (24)
CHEBI:6650 (24)
CHEBI:17154 (24)
CHEBI:18211 (24)
CHEBI:18066 (23)
CHEBI:17822 (23)
CHEBI:15414 (23)

Metabolite Name

Adenosine (20)
Ornithine (15)
Methionine (15)
Adenine (15)
Uridine (15)
Creatine (15)
Tryptophan (15)
Proline (14)
Phenylalanine (14)
Citrate (14)
Glycerophosphocholine (14)
Hypoxanthine (14)
Histidine (13)
Valine (13)
Betaine (13)
Lysine (13)
Asparagine (13)
Tyrosine (13)
Cytidine (13)
Inosine (13)
UDP (12)
AMP (12)
Citrulline (12)
Pantothenate (12)
Ergothioneine (12)
UMP (12)
Nicotinamide (12)
Arginine (12)
Threonine (12)
Succinate (12)

First Public Date

2025 (2)
2013 (2)
2026 (1)
2019 (1)
2016 (1)
2014 (1)

Modification

15.994915 (102)
57.021464 (85)
Not available (49)
42.010565 (41)
-17.026549 (22)
4x(15)N labeled L-arginine (22)
2x(15)N labeled L-lysine (21)
79.966331 (20)
0.984016 (13)
4-tetrahydrothiazine-3-carboxylic acid (12)
45.029395 (10)
56.026215 (10)
58.005479 (8)
59.036279 (8)
N6 (8)
+3amu) (7)
-18.010565 (7)
6.020129 (7)
10.008269 (6)
144.102062 (6)
45.987721 (6)
27.994915 (5)
32.056407 (5)
N6-dimethyl-L-lysine (5)
4 (4)
31.989829 (3)
3x(2)H labeled N6-acetyl-L-lysine (3)
4x(2)H labeled dimethylated residue (3)
14.01565 (2)
28.0313 (2)

Release Date

2015 (26)
2022 (23)
2012 (21)
2016 (20)
2011 (20)
2010 (20)
2018 (18)
2013 (18)
2014 (17)
2021 (15)
2020 (15)
2019 (15)
2023 (10)
2017 (10)
2025 (7)
2024 (7)
2009 (7)
2008 (6)
2026 (2)
2006 (1)

Lab affiliation

EDyP (35)
Vanderbilt University (22)
Wageningen University (14)
Centre for Genomic Regulation (13)
ETH Zurich (13)
Biochemistry (11)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
NARO Institute of Crop Science (10)
Pacific Northwest National Laboratory (10)
Ruhr University Bochum, Germany (10)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (10)
CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France (9)
CRUK Beatson Institute (9)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (9)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (8)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (8)
Department of Biomedical Sciences, University of Padova, Italy (8)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (8)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (7)
Department of Chemical & Systems Biology, Stanford University (7)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (7)
Department of Molecular Biology, Princeton University, USA (7)
CEA-Marcoule, DSV-iBEB-SBTN-LBSP, 30207 Bagnols-sur-Cèze, France (6)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (6)
Chemistry Department, Boston College, USA (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Federal University of Rio de Janeiro (6)
Institute for Systems Biology (6)
Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (6)

Publication date

2016 (525)
2018 (525)
2019 (518)
2014 (514)
2022 (500)
2020 (461)
2017 (445)
2015 (434)
2021 (428)
2023 (357)
2024 (288)
2025 (243)
2013 (240)
2026 (91)
2012 (81)
2011 (77)
2010 (21)
2009 (18)
2008 (9)
2006 (1)
2007 (1)

Tags

xref:PubMed:27362937 (1)
xref:PubMed:20237107 (1)

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Annotation of the human adult urinary metabolome and metabolite identification using ultra high performance liquid chromatography coupled to a LTQ-Orbitrap mass spectrometer

This study deals with the annotation of the human adult urinary metabolome and metabolite identification from electrospray-mass spectrometry (ESI-MS) based metabolomics datasets. Metabolite identification was achieved using two complementary approaches: (i) formal identification by matching chromato...

2013-07-26 | MTBLS20 | MetaboLights

Targeted Proteomics of NERD and FLS2 on LTQ-Orbitrap Velos Mass Spectrometer

Targeted proteomics has become increasingly popular recently because of its ability to precisely quantify selected proteins in complex cellular backgrounds. We demonstrate the utility of an LTQ-Orbitrap Velos Pro mass spectrometer in targeted parallel reaction monitoring (PRM) despite its unconventi...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2015-12-09 | PXD001119 | Pride