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MetabolomicsViral lysis and host reprogramming impact carbohydrate, amino acid, and osmolyte cycling in salt marsh tidal creek sediments

Salt marshes are highly productive ecosystems where microbial communities drive key

transformations of organic matter at rates often exceeding those of oceanic and inland

environments. Viruses are recognised as important drivers and regulators of global

biogeochemical cycling, y...

2026-06-26 | MTBLS12630 | MetaboLights
TranscriptomicsPseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA
Biofilms are surface-adhered bacterial communities encased in an extracellular matrix composed of polysaccharides, proteins, and extracelluar (e)DNA, with eDNA being required for the formation and integrity of biofilms. Here we demonstrate that the spatial and temporal release of eDNA is regulated b...
ORGANISM(S): Pseudomonas aeruginosa 
2011-06-01 | E-GEOD-28953 | biostudies-arrayexpress
TranscriptomicsIGR_HYPOXIA _MIR210_STUDY_SC
Hypoxia in the tumor microenvironment plays a crucial role in the evasion of immune surveillance by tumor cells. In this study, we aimed to identify the miRs regulated by hypoxia in NSCLC and melanoma and their putative involvement in the regulation of tumor susceptibility to antigen-specific cytoto...
ORGANISM(S): Homo sapiens 
2012-11-01 | E-MTAB-1157 | biostudies-arrayexpress
GenomicsCommon cell lysis procedures distort ribosome profiling analyses of gene expression
Common cell lysis procedures distort ribosome profiling analyses of gene expression
PRJNA1148174 | ENA
ProteomicsDifferential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics
A differential lysis approach was developed with different strength of lysis buffers (urea and/or sodium dodecyl sulfate) and applied on human stool samples to separate different microbial species to increase the depth of metaproteomic measurements. We showed that the lysates dominating by proteins ...
ORGANISM(S): Escherichia coli 
2023-03-27 | PXD016787 | Pride
Human Lc-msms Gut microbiome 
TranscriptomicsCommon cell lysis procedures distort ribosome profiling analyses of gene expression
Ribosome profiling is a powerful technique used to study gene expression on a transcriptome-wide scale. It involves sequencing of mRNA fragments protected by ribosomes from ribonuclease digestion. The initial steps commonly involve cell lysis followed by centrifugation and ribonuclease digestion. We...
ORGANISM(S): Homo sapiens 
2025-05-30 | GSE274847 | GEO
TranscriptomicsTranscriptional differences in nasopharyngeal carcinoma cell lines induced to reactivate EBV lysis
We report transcriptional differences in the nasopharyngeal carcinoma cell line NPC43 following induction of EBV lysis and reactivation
ORGANISM(S): Homo sapiens 
2025-10-01 | GSE286373 | GEO
GenomicsLysis Instrument Choice Independently Biases Gram-Staining Recovery and Metagenome-Assembled Genome Yield in Porcine Fecal Shotgun Metagenomics
Using fecal samples from 10 male German Landrace × Pietrain crossbred pigs, we systematically evaluated seven kit–lysis instrument combinations derived from three commercial DNA extraction kits and three lysis instruments
PRJEB113298 | ENA
GenomicsHomogenization of insect bulk samples provides more comprehensive yet comparable biodiversity data than non-destructive lysis
Homogenization of insect bulk samples provides more comprehensive yet comparable biodiversity data than non-destructive lysis
PRJEB76617 | ENA
GenomicsTranscriptional differences in nasopharyngeal carcinoma cell lines induced to reactivate EBV lysis
Transcriptional differences in nasopharyngeal carcinoma cell lines induced to reactivate EBV lysis
PRJNA1209003 | ENA
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