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ProteomicsMulti-omics driven metabolic network reconstruction and analysis of lignocellulosic carbon utilization in Rhodosporidium toruloides
Global proteomics datasets to study lignocellulosic carbon utilization in Rhodosporidium Toruloides
ORGANISM(S): Rhodotorula toruloides 
2021-09-09 | PXD022377 | Pride
Multi-omics Genome-scale models Lignocellulosic biomass Rhodosporidium toruloides Metabolic networks 
ProteomicsPeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Global proteomics datasets to study ash utilization by R. toruloides. PeakDecoder is a workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. It is available at https://github.com/EMSL-Computing/PeakDecoder
ORGANISM(S): Rhodosporidium Toruloides Np11 (ncbitaxon:1130832) 
2023-02-03 | MSV000091202 | MassIVE
ProteomicsCorn stover variability drives differences in Rhodo conversion to SAF-Task 7-Okonkwo-2023-ABPDU
Discovery proteomics of R. toruloides strains' usage of corn stover variability study (ABPDU)
ORGANISM(S): Rhodotorula Toruloides (ncbitaxon:5286) 
2024-07-26 | MSV000095450 | MassIVE
ProteomicsComprehensive genome-scale and pathway engineering for production of the sustainable aviation fuel in Pseudomonas putida
Biological production of aviation fuels has a realistic impact on global warming. Important sustainable aviation fuel (SAF) targets are emerging and isoprenol is recently identified as a precursor for a promising SAF compound DMCO (1,4-dimethylcyclooctane). Isoprenol has been produced in several eng...
ORGANISM(S): Pseudomonas Putida Kt2440 
PXD039868 | panorama
ProteomicsRaw data for the characterization of a Pseudomonas putida malonyl-ACP decarboxylase
Raw data for top down LCMS for detecting modifications on recombinant proteins, and GCMS for fatty acid methyl ester analysis. Sample nomenclature is summarized in the Powerpoint and PDF files. Details of experiments are given in the associated manuscript.
ORGANISM(S): Pseudomonas Putida Kt2440 (ncbitaxon:160488) 
MSV000090294 | MassIVE
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