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GenomicsRole of Fnr1 and Fnr3 in transcriptional regulation under oxygen limitation in Herbaspirillum seropedicae
To determine the direct promoter targets of Fnr proteins, we correlated transcriptional changes observed in single fnr1 and fnr3 mutants (E-MTAB-5741) with ChIP-Seq analysis, taking advantage of C-terminally 3xFlag fnr alleles engineered into the H. seropedicae genome. ChIP-seq data were obtained fr...
ORGANISM(S): Herbaspirillum seropedicae 
2018-02-26 | E-MTAB-6395 | biostudies-arrayexpress
TranscriptomicsRNA-Seq transcriptional analysis of Herbaspirillum seropedicae fnr1 and fnr3 deletion mutants in comparison with the wild type under two different oxygen regimes
To systematically address the role of different Fnr proteins in the transcription regulation in response to varying oxygen levels, we have established an oxygen switch protocol to study the transcriptional changes directly or indirectly associated with these oxygen-sensitive regulatory proteins. To ...
ORGANISM(S): Herbaspirillum seropedicae 
2018-02-26 | E-MTAB-5741 | biostudies-arrayexpress
TranscriptomicsRNA-seq transcription analysis of Herbaspirillum seropedicae phaC1 mutant strain in comparison with the wild type strain (SmR1)
In this study, we have investigated the physiological consequences of PHB (poly(3-hydroxybutyrate)) synthesis in H. seropedicae by characterising the trancriptional changes in a mutant strain lacking phaC1 gene which codes for the PHA synthase enzyme essential for the last step in the synthesis of P...
ORGANISM(S): Herbaspirillum seropedicae 
2016-11-28 | E-MTAB-5303 | biostudies-arrayexpress
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