Marinum - OmicsDI

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Danio rerio (63)
Mycobacterium marinum (15)
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Homo sapiens (2)
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Arabidopsis thaliana (1)
Mycobacterium marinum E11 (1)
Dictyostelium discoideum AX2 (1)
Candidatus Puniceispirillum marinum IMCC1322 (1)
Dictyostelium discoideum AX4 (1)
Dictyostelium discoideum (1)
Mycolicibacterium smegmatis (1)
Mycobacterium marinum ATCC BAA-535 (1)
Mycobacteriales (1)

Organisms

Danio rerio (47)
Mycobacterium marinum (26)
Cysteiniphilum marinum (6)
Mus musculus (4)
Mycobacterium marinum M (3)
Hordeum marinum (3)
Uronema marinum (3)
Methylocaldum marinum (3)
Exiguobacterium marinum (2)
Candidatus Puniceispirillum marinum IMCC1322 (2)
Mycobacterium marinum ATCC BAA-535 (2)
Rhodovulum marinum (2)
Mesorhizobium marinum (2)
Mycobacterium marinum E11 (2)
Mangrovibacterium marinum (2)
mouse gut metagenome (2)
unidentified (2)
Aestuariibaculum marinum (1)
Paraphotobacterium marinum (1)
Cellulosimicrobium marinum (1)
Corynebacterium marinum DSM 44953 (1)
Plebeiibacterium marinum (1)
Sphingomicrobium marinum (1)
Cyclobacterium marinum (1)
Planctobacterium marinum (1)
Punavirus P1 (1)
Salinigranum marinum (1)
Natrinema marinum (1)
Halobaculum marinum (1)
Methanogenium marinum (1)

Repository

ENA (232)
geo (72)
biostudies-arrayexpress (21)
pride (11)
MassIVE (7)
GNPS (3)
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iProX (1)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Cell culture (1)
Culture fluid (1)
Monocyte (1)

Disease

Tuberculosis (3)
Fish tuberculosis (1)
Primary tuberculosis (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (8)
Bottom-up proteomics (2)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive (4)
Impact II (2)
LTQ Orbitrap Velos (2)
TimsTOF Pro 2 (2)
Illumina NovaSeq X (1)
Q Exactive HF (1)
TimsTOF Pro (1)
Agilent 6520 QTOF (1)

Publication Date

2023 (15)
2014 (12)
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2018 (8)
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2019 (7)
2013 (6)
2026 (5)
2016 (5)
2017 (5)
2012 (4)
2010 (4)
2022 (4)
2020 (4)
2009 (3)
2008 (3)
2015 (2)
2007 (1)
2005 (1)

CHEBI ID

CHEBI:137423 (1)
CHEBI:137422 (1)
CHEBI:137421 (1)
CHEBI:137420 (1)
CHEBI:137418 (1)
CHEBI:137417 (1)
CHEBI:137416 (1)
CHEBI:137414 (1)
CHEBI:137413 (1)

Metabolite Name

(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanododecylidene]-L-lysine (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanodecylidene]-L-lysine (1)
(3R)-3-[(carboxymethyl)amino]decanoic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxydecylidene)amino]hexyl}decanimidic acid (1)
(1Z,3R)-N-[(5S)-6-hydroxy-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(1Z,3R)-N-[(5S)-6-(acetyloxy)-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(3R)-3-[(carboxymethyl)amino]butanoic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxyhexylidene)amino]hexyl}hexanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxybutylidene)amino]hexyl}butanimidic acid (1)

First Public Date

2023 (33)
2026 (26)
2013 (24)
2021 (18)
2019 (18)
2025 (17)
2024 (17)
2014 (17)
2020 (14)
2022 (11)
2017 (11)
2016 (11)
2018 (10)
2015 (5)

Classification

bacteria (42)
viruses (1)
protozoa (1)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (8)

Release Date

2025 (41)
2023 (40)
2024 (37)
2021 (33)
2019 (33)
2018 (31)
2020 (30)
2022 (26)
2016 (24)
2017 (23)
2015 (22)
2013 (20)
2014 (19)
2012 (16)
2009 (10)
2011 (10)
2026 (8)
2010 (8)
2008 (6)
2005 (5)
2007 (4)
2003 (4)
2004 (3)
2002 (3)
1998 (3)
2006 (2)
2001 (2)
2000 (2)

Lab affiliation

OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
1. Tuberculosis Research Program Centenary Institute, The University of Sydney, Camperdown, NSW 2050, Australia 2. The University of Sydney, Discipline of Infectious Diseases & Immunology and Sydney Institute for Infectious Diseases, Camperdown, NSW 2050, Australia (1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Faculty of Medicine and Health Technology, FI-33014, Tampere University, Finland (1)
Head of Proteomics (1)
Lipolysis and bacterial Pathogenicity Team LISM UMR7255 CNRS 31, chemin Joseph Aiguier - CS 70071 F-13402 marseille cedex 09 (1)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Center, Amsterdam, The Netherlands (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)
Professor, School of Life Sciences, The Chinese University of Hong Kong Director, Centre for Protein Science and Crystallography Assistant Dean (Student Affairs), Faculty of Sciences Fellow, Shaw College (1)

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Proteomics analysis of mycobacterium marinum culture filtrate

Mycobacterium marinum is a pathogenic bacterium that causes infections in both fish and humans. The PE/PPE protein family is unique to mycobacteria and has been implicated in various aspects of mycobacterial pathogenicity. Understanding the presence and potential function of these proteins in M. mar...

ORGANISM(S): Mycobacterium marinum (strain ATCC BAA-535 / M)

2025-05-13 | PXD050612 | Pride