Martins C C - OmicsDI

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Unknown (3058)
Proteomics (149)
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Genomics (24)
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Models (6)
Other (1)

Organisms

Homo sapiens (133)
Mus musculus (26)
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cellular organisms (4)
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Lathyrus oleraceus (2)
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Paracoccidioides brasiliensis (1)
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Amblyomma sculptum (1)
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Ornithodoros erraticus (1)

Organisms

Homo sapiens (7)
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Repository

pride (136)
biostudies-arrayexpress (92)
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Tissue

Cell culture (35)
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Disease

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Renal cell carcinoma (1)
Retinopathy (1)
Seckel syndrome (1)

Technology Type

Mass Spectrometry (136)
Shotgun proteomics (87)
Bottom-up proteomics (26)
HDMSE (19)
Data-dependent acquisition (10)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (9)
Gel-based experiment (7)
Data-independent acquisition (4)
NMR spectroscopy (3)
SWATH MS (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Top-down proteomics (2)
Affinity proteomics (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (8)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
LTQ Orbitrap (5)
LTQ Orbitrap Elite (4)
Liquid Chromatography MS - positive - reverse phase (4)
Ion Torrent PGM (3)
Illumina HiSeq 2500 (3)
Q Exactive Focus (3)
Liquid Chromatography MS - negative - reverse phase (3)
Nuclear Magnetic Resonance (NMR) - (3)
Flat panel airlift-loop reactor with a 1.7 L working volume (2)
Maxwell® 16 LEV simplyRNA Tissue kit (Promega) (2)
NextSeq 2000 (2)
LTQ Orbitrap Velos (2)
Q Exactive (2)
Agilent G2565AB microarray scanner (1)
HiSeq 2000 (1)
Illumina TrueSeq Exome Kit (1)
Qiagen DNAeasy blood and tissue kit (1)
Algaemist airlift-loop photobioreactors, volume=0.38L (1)
Agilent Microarray scanner (G2505C) (1)
Dell PowerEdge R820 (1)
Illumina Genome Analyzer IIx (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 2000 (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
MS:1000031 (1)

Publication Date

2022 (32)
2025 (25)
2024 (23)
2023 (22)
2021 (21)
2014 (20)
2026 (18)
2018 (17)
2013 (16)
2019 (14)
2020 (11)
2016 (9)
2012 (9)
2017 (8)
2015 (7)
2010 (7)
2011 (3)
2005 (2)
2008 (1)
2007 (1)
2004 (1)

UNIPROT ID/AC

A0A0K0LT60 (1)
A0A0K0LT76 (1)
A0A0U5A9X2 (1)
A0A185IIQ0 (1)
A0A1S2WYT7 (1)
A0A1S2WZD5 (1)
A0A1S2WZE0 (1)
A0A1S2X0C2 (1)
A0A1S2X0R8 (1)
A0A1S2X277 (1)
A0A1S2X3Z6 (1)
A0A1S2X522 (1)
A0A1S3KHY8 (1)
A0A1S3KID5 (1)
A0A1S3KIG1 (1)
A0A1S3KIR7 (1)
A0A1S3KIT4 (1)
A0A1S3KIV7 (1)
A0A1S3KJ55 (1)
A0A1S3KJA5 (1)
A0A1S3KJH9 (1)
A0A1S3KJJ6 (1)
A0A1S3KJN3 (1)
A0A1S3KJP4 (1)
A0A1S3KJR3 (1)
A0A1S3KJV8 (1)
A0A1S3KKD5 (1)
A0A1S3KKF6 (1)
A0A1S3KKM1 (1)
A0A1S3KKT1 (1)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:15428 (4)
CHEBI:16027 (4)
CHEBI:14575 (2)
CHEBI:15343 (2)
CHEBI:15361 (2)
CHEBI:15366 (2)
CHEBI:15422 (2)
CHEBI:15846 (2)
CHEBI:15978 (2)
CHEBI:16001 (2)
CHEBI:16084 (2)
CHEBI:16108 (2)
CHEBI:16236 (2)
CHEBI:16526 (2)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:17754 (2)
CHEBI:17794 (2)
CHEBI:17835 (2)
CHEBI:18021 (2)
CHEBI:18367 (2)
CHEBI:28087 (2)
CHEBI:28757 (2)
CHEBI:29052 (2)
CHEBI:30031 (2)
CHEBI:30751 (2)
CHEBI:4167 (2)
CHEBI:1 (1)
CHEBI:10059 (1)
CHEBI:10066 (1)

Metabolite Name

Alanine (2)
Glucose (2)
Lactate (2)
Leucine (2)
Malonate (2)
Maltose (2)
Succinate (2)
Threonine (2)
Valine (2)
(+/-)5-HEPE (1)
(+/-)5-HEPE / 5(S)-HEPE (1)
(R)-3-hydroxybutyrylcarnitine (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,5-di-O-E-caffeoylquinic acid (1)
1,6-anhydroglucose (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-Methylnicotinamide (1)
1-arachidonoyl-GPI* (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)

First Public Date

2015 (4)
2017 (3)
2024 (2)
2021 (1)
2014 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (3)

Lab affiliation

Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil (5)
Chemical Engineering and Biotechnology (3)
Federal University of Uberlandia (3)
Department of Biochemistry and Molecular Biology, Protein Research group, University of Southern Denmark, Odense, Denmark (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Group Leader Cell&Developmental Biology John Innes Centre Norwich, UK (2)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Ludwig-Maximiliam-University of Munich (2)
MRC Toxicology Unit, University of Cambridge (2)
Wageningen University (2)
1- i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
1- i3S - Instituto de Investigação e Inovação em Saúde,Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
Associate Professor at University of Campinas, Sao Paulo-Brazil (UNICAMP-SP. (1)
Associate professor at University of Campinas-SP (UNICAMP-SP) (1)
BioFIG (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Reseach and Utrecht Institute of Pharmaceutical Sciences Utrecht University Padualaan 8, 3584 CH Utrecht, The Netherland (1)
Breast Cancer Now The Institute of Cancer Research (1)
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Porto University (1)
Carlos Chagas Institute, Fiocruz Parana, Brazil (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil (1)
Centre of Molecular Biology University Heidelberg Im Neuenheimer Feld 282 D-69120 Heidelberg Germany (1)
Dep. Biochemistry, Institute of Chemistry, Federal University of Rio de Janeiro (1)
Dep. of Oncology-Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil. (1)
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, Brazil (1)
Departamento de Parasitologia Instituto de Ciências Biomédicas, Universidade de São Paulo Av. Prof. Lineu Prestes, 1374, sala 39, Sao Paulo, Brazil (1)
Departamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)
Non Miriam (1)

Modification

15.994915 (2)
57.021464 (2)
Not available (1)

Study type

Transcription profiling by array (41)
RNA-seq of coding RNA (20)
Genotyping by array (5)
DNA-seq (5)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (2)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
ScATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (425)
2025 (368)
2021 (368)
2023 (355)
2024 (329)
2020 (258)
2019 (189)
2018 (180)
2017 (136)
2016 (97)
2014 (77)
2015 (76)
2026 (59)
2013 (56)
2012 (51)
2011 (38)
2010 (26)
2008 (19)
2009 (9)
2007 (7)
2005 (6)
2006 (5)
2003 (5)
2004 (4)
2002 (3)
2001 (1)
2000 (1)
1999 (1)

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Spatially different annual cycles but similar haemosporidian infections in distant populations of collared sand martins.

Not available

S-EPMC10127412 | biostudies-literature

Mechanistic insights into glycoside 3-oxidases involved in C-glycoside metabolism in soil microorganisms.

Not available

S-EPMC10646112 | biostudies-literature

Effect of a KRAS peptide nucleic acid clamp on the Ion Torrent sequencing protocol

To test whether the addition of a peptide nucleic acid (PNA) clamp, which binds WT KRAS at codon 12, can increase the efficacy of mutation detection for KRASG12D within a targeted NGS setting. We tested the effect of clamping the wild-type KRAS sequence in a reference standard (Tru-Q 7, 1.3% Tier fr...

ORGANISM(S): Homo sapiens

2017-07-29 | E-MTAB-5718 | biostudies-arrayexpress

Proteome of the Human Corpus Callosum

Characterization of the human Anterior Temporal Lobe and Corpus Callosum: C-HPP

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-06-10 | MSV000083947 | MassIVE

Proteome of the Human Corpus Callosum

Characterization of the human Anterior Temporal Lobe and Corpus Callosum: C-HPP

ORGANISM(S): Homo sapiens (Human)

2014-06-05 | PXD000547 | Pride