Massa R R - OmicsDI

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Unknown (399)
Transcriptomics (314)
Genomics (21)
Proteomics (7)
Metabolomics (4)

Organisms

Mus musculus (149)
Homo sapiens (112)
Rattus norvegicus (28)
Bos taurus (10)
Sus scrofa (8)
Callithrix jacchus (4)
Yarrowia lipolytica (4)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (3)
Schizosaccharomyces pombe (2)
Solanum lycopersicum (2)
Arabidopsis thaliana (2)
Rhodopseudomonas palustris (1)
Populus x canadensis (1)
Vulpes vulpes (1)
Aspergillus niger (1)
Macaca mulatta (1)
Chlamydomonas reinhardtii (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)
Ovis aries (1)
Mycobacterium tuberculosis H37Rv (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Plasmodium falciparum (1)

Organisms

Solanum tuberosum (1)

Repository

biostudies-arrayexpress (334)
MetaboLights (4)
MassIVE (3)
pride (3)
iProX (1)
ENA (1)

Tissue

Blood (1)
Cell culture (1)
Hepatocyte (1)
Liver (1)

Disease

Normal (3)
Cocaine addiction (1)
Hypertension (1)
Malignant melanoma (1)
Partially decidualised (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (3)
Mass spectrometry (2)
Mass spectrometry assay (2)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina NovaSeq X (6)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (6)
Illumina HiSeq 2000 (5)
NextSeq 500 (5)
NextSeq 2000 (3)
Illumina HiSeq 1000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer Iix (1)
BD Fortessa (1)
Agilent Technologies Scanner G2505C (1)
GenePix Personal 4100A [Axon Instruments] (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
ScanArray Express HT [PerkinElmer] (1)
Scanning hardware (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Orbitrap Eclipse (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - acquity-uplc-hss-t3 (1)

Publication Date

2013 (45)
2014 (36)
2015 (34)
2016 (33)
2012 (32)
2011 (32)
2010 (30)
2008 (14)
2026 (12)
2007 (11)
2025 (10)
2009 (9)
2022 (8)
2024 (7)
2021 (6)
2005 (5)
2023 (4)
2018 (4)
2017 (4)
2006 (3)
2020 (2)
2004 (2)
2019 (1)

Metabolite Name

Thymine (2)
(+)(1R,2R)1,2Diphenylethane1,2diol (1)
(+)-Ophiobolin A (1)
(+)-Selfotel (1)
(+)Abscisic acid (1)
(+/-)-1-phenylethanol (1)
(-)-Polygodial (1)
(-)-beta-Caryophyllene epoxide (1)
(-)-maackiain-3-O-glucoside (1)
(1'R)Nepetalic acid (1)
(1R,2R)1,2,7,7Tetramethylbicyclo[2.2.1]heptan2ol (1)
(1xi,3xi)1,2,3,4Tetrahydro1methylbetacarboline3carboxylic acid (1)
(23S,24S)17,23Epoxy24,29dihydroxy27norlanost8ene3,15dione (1)
(24S)7alpha,24Dihydroxycholesterol (1)
(2Methoxyethoxy)propanoic acid (1)
(2alpha,3beta)20(29)Lupene2,3,28triol (1)
(2xi,20beta)2,20Dihydroxy3oxo12ursen28oic acid (1)
(2xi,3xi,6E)3,7Dimethyl6octene1,2,3,8tetrol (1)
(3R, 6'Z)3,4Dihydro8hydroxy3(6pentadecenyl)1H2benzopyran1one (1)
(3alphaOH,20S,24S)3,19:20,24Diepoxydammarane3,25diol (1)
(3beta,17alpha,23S)17,23Epoxy3,29dihydroxy27norlanost8en24one (1)
(3beta,17alpha,23S,24S)17,23Epoxy3,24,29trihydroxy27norlanost8en15one (1)
(3beta,22E,24R)23Methylergosta5,7,22trien3ol (1)
(3beta,22E,24R)5,8Epidioxy23methylergosta6,22dien3ol (1)
(3beta,5alpha,6alpha,7alpha,22E,24R)5,6Epoxyergosta8,14,22triene3,7diol (1)
(3beta,5alpha,6beta,24R)Stigmastane3,5,6triol (1)
(8S)-8-Amino-7-oxononanoic acid (1)
(9S,10E,12S,13S)9,12,13Trihydroxy10octadecenoic acid (1)
(9S,10S)9,10dihydroxyoctadecanoate (1)
(9Z,12Z,14E)16Hydroxy9,12,14octadecatrienoic acid (1)

First Public Date

2013 (1)

Study type

Transcription profiling by array (218)
RNA-seq of coding RNA (37)
RNA-seq of coding RNA from single cells (13)
ChIP-seq (10)
Methylation profiling by high throughput sequencing (10)
Comparative genomic hybridization by array (6)
RNA-seq of total RNA (6)
Unknown experiment type (5)
Methylation profiling by array (5)
ChIP-chip by tiling array (4)
Transcription profiling by RT-PCR (3)
Bisulfite-seq (2)
Other (2)
RNA-seq of non coding RNA (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Trajectory (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2023 (74)
2022 (65)
2021 (49)
2016 (49)
2025 (48)
2024 (47)
2013 (46)
2015 (43)
2014 (42)
2012 (39)
2011 (36)
2010 (33)
2020 (30)
2018 (22)
2017 (22)
2019 (21)
2008 (18)
2026 (15)
2007 (12)
2009 (11)
2005 (5)
2006 (3)
2004 (3)

Lab affiliation

Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil (1)
University Hospital Bonn Institute for Biochemistry and Molecular Biology Nussallee 11 53115 Bonn Germany (1)
Università degli Studi di Catania, Dipartimento di Scienze Chimiche, Laboratorio di Spettrometria di massa organica (1)

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Coprological Survey of Protostrongylid Infections in Antelopes from Souss-Massa National Park (Morocco).

Not available

S-EPMC7734666 | biostudies-literature

Discovery of Anti-Inflammatory Alkaloids from Sponge <i>Stylissa massa</i> Suggests New Biosynthetic Pathways for Pyrrole-Imidazole Alkaloids.

Not available

S-EPMC11509139 | biostudies-literature

Myocardial-specific R-spondin3 drives proliferation of the coronary stems primarily through the Leucine Rich Repeat G Protein coupled receptor LGR4.

Not available

S-EPMC6365680 | biostudies-literature

R.palustris: cbbT1 overexpression and cbbT2 overexpression

Transcriptional profiling of Rhodopseudomonas palustris (R. palustris) comparing cbbT1 over-expressing strain with cbbT2 over-expressing strain. Goal was to discriminate the molecular mechanisms between transketolase I (cbbT1) and transketolase II (cbbT2). R.palustris is a purple non-sulfur anoxygen...

ORGANISM(S): Rhodopseudomonas palustris

2014-05-06 | E-GEOD-29310 | biostudies-arrayexpress

A database of calculated solution parameters for the AlphaFold predicted protein structures.

Not available

S-EPMC9072687 | biostudies-literature

Isolation and Characterisation of a Novel Trophoblast Hoescht Side-Population with Stem Cell Properties from First Trimester Placentae

In this work, we have isolated a Hoescht side-population of trophoblasts from first trimester human placentae that cluster separately from more differentiated trophoblast populations, and have a transcriptomic profile indicative of a stem cell population. Hoescht side-population cells were compared ...

ORGANISM(S): Homo sapiens

2015-11-03 | E-GEOD-57834 | biostudies-arrayexpress

Sharkey trophoblast

Transcriptional profiling comparison of human primary villous trophoblast and extra-villous trophoblast (VT and EVT respectively) cells, isolated from the placenta at 8 to 12 weeks gestation, with complimentary transcriptional profiling of choriocarcinoma cell lines JEG-3 and JAR. Based on phenotypi...

ORGANISM(S): Homo sapiens

2011-04-28 | E-MTAB-429 | biostudies-arrayexpress

Expression data from liver, PFC and amygdala of mice treated with PPAR agonists

Peroxisome proliferator-activated receptors (PPARs) are nuclear hormone receptors that act as ligand-activated transcription factors. Although prescribed for dyslipidemia and type-II diabetes, PPAR agonists have demonstrated therapeutic properties for several brain disorders, including alcohol depen...

ORGANISM(S): Mus musculus

2015-04-14 | E-GEOD-67796 | biostudies-arrayexpress

Lipidomic Analysis to Assess the Correlation between Ceramides, Stress Hyperglycemia, and HbA1c in Acute Myocardial Infarction.

Not available

S-EPMC9862855 | biostudies-literature

AlphaFold-predicted protein structures and small-angle X-ray scattering: insights from an extended examination of selected data in the Small-Angle Scattering Biological Data Bank.

Not available

S-EPMC10405597 | biostudies-literature