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TranscriptomicsTranslation profiling of fission yeast wild type and rng3-65 fission yeast to identify changes in th enumber of ribosomes associated with specific transcripts
Genome-wide translational profiling of rng3-65 compared to wild type cells. We used sucrose gradients to separate RNAs according to the number of associated ribosomes (a surrogate for translational efficiency). Preparation of the extracts and fractionation was carried out as described in Lackner e...
ORGANISM(S): Schizosaccharomyces pombe 
2008-12-23 | E-TABM-565 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of rep1delta mutant fission yeast during meiosis
Changes in gene expression are hallmarks of cellular differentiation. Sexual differentiation in fission yeast (Schizosaccharomyces pombe) provides a model system for gene expression programs accompanying and driving cellular specialization. The expression of hundreds of genes is modulated in succe...
ORGANISM(S): Schizosaccharomyces pombe 
2008-01-01 | E-TABM-300 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type, rsv1 deletion and SPBC11-5.14 deletion mutant fission yeast
Changes in gene expression are hallmarks of cellular differentiation. Sexual differentiation in fission yeast (Schizosaccharomyces pombe) provides a model system for gene expression programs accompanying and driving cellular specialization. The expression of hundreds of genes is modulated in succe...
ORGANISM(S): Schizosaccharomyces pombe 
2008-01-01 | E-TABM-301 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of mei4delta mutant fission yeast during meiosis
Changes in gene expression are hallmarks of cellular differentiation. Sexual differentiation in fission yeast (Schizosaccharomyces pombe) provides a model system for gene expression programs accompanying and driving cellular specialization. The expression of hundreds of genes is modulated in success...
ORGANISM(S): Schizosaccharomyces pombe 
2008-01-01 | E-TABM-298 | biostudies-arrayexpress
TranscriptomicsIdentification of ploidy-regulated genes in budding yeast
Using RNA-seq, we analyzed the transcriptomes of isogenic haploid (MATa) and tetraploid (MATaaaa) budding yeast strains in the Sigma 1278b background and identified genes whose regulation was altered by ploidy. Analysis of poly(A)+ RNA from 2 biological replicates of haploid (MATa) and tetraploid (M...
ORGANISM(S): Saccharomyces cerevisiae 
2010-11-04 | E-GEOD-19685 | biostudies-arrayexpress
UnknownFactors associated with D-dimer levels in HIV-infected individuals.
Not available
S-EPMC3953205 | biostudies-literature
TranscriptomicsPKC1 cell cycle study
Transcriptional profiling of a Saccharomyces cerevisiae protein kinase Pkc1p temperature sensitive mutant on cells synchronised in S phase and then released. The Mcm1p-Fkh2p-Ndd1p complex in Saccharomyces cerevisiae controls the cyclical expression of the CLB2 cluster of genes at the G2/M phase tran...
ORGANISM(S): Saccharomyces cerevisiae 
2013-03-14 | E-MEXP-3667 | biostudies-arrayexpress
UnknownGenetic screening identifies a SUMO protease dynamically maintaining centromeric chromatin.
Not available
S-EPMC6981222 | biostudies-literature
TranscriptomicsTranscription profiling of stress treated fission yeast (stressors: compound: heavy metal, oxidation, alkylation and osmosis
Transcriptional profile of stress in fission yeast (S. pombe) cells. Five different types of stress were employed on wild type and mutant cells (sty1 and atf1 knock-out cells). The 5 stresses were heat, and four types of compound: heavy metal, oxidation, alkylation and osmosis.
ORGANISM(S): Schizosaccharomyces pombe 
2004-10-31 | E-MEXP-29 | biostudies-arrayexpress
TranscriptomicsMC EMiNEM Maps the Interaction Landscape of the Mediator
By applying MC EMiNEM (a novel method based on the concept of Nested Effects Models (NEMs) for the retrieval of functional dependencies between proteins that have pleiotropic effects on mRNA transcription) to the expression data from four gene perturbation studies (three of them unpublished) in Sacc...
ORGANISM(S): Saccharomyces cerevisiae 
2012-06-01 | E-MTAB-1037 | biostudies-arrayexpress
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