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TranscriptomicsResponse of tobacco cells to Glucan elicitor
We have previously reported that the responses of tobacco tissues treated with AaGlucan are similar to those for laminarin [1]. To better understand the overall responses and signaling pathways in tobacco, we have identified here AaGlucan and laminarin early response genes, using a custom 16K BY-2 m...
ORGANISM(S): Nicotiana tabacum 
2007-10-16 | E-GEOD-6948 | biostudies-arrayexpress
TranscriptomicsExamination of the function of NtMYBGR1 and NtDC1B in tobacco BY-2 cells.
Overexpression lines for each of NtMYBGR1 (Genbank accession No. AB279612) and NtDC1B (Genbank accession No. AB279614) were used to characterize the function of NtMYBGR1 and NtDC1B in tobacco BY-2 cells. We then analyzed the effect of overexpression of these genes on the expression of other genes, ...
ORGANISM(S): Nicotiana tabacum 
2007-10-15 | E-GEOD-6949 | biostudies-arrayexpress
ProteomicsTracking genome-editing and associated molecular perturbations by SWATH mass spectrometry
Advances in gene editing now allow reverse genetics to be applied to a broad range of biological systems. Ultimately, any modification to coding sequences requires confirmation at the protein level, although immunoblotting is often hampered by antibody quality or availability especially in non-mamma...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) Bicyclus anynana Mus musculus (Mouse) 
2019-10-24 | PXD013176 | Pride
Crispr Swath Gene editing 
ModelsMizuno2012 - AlzPathway: a comprehensive map of Alzheimer's disease
Mizuno2012 - AlzPathway: a comprehensive map of Alzheimer's disease Non-kinetic molecular map. Pure SBML file of AlzPathway provided by the authors as Additional file 5. This model is described in the article: AlzPathway: a comprehensive map of signaling pathways of Alzheime...
2016-05-09 | MODEL1504290001 | BioModels
TranscriptomicsTranscriptome analysis in rice smos1 mutant
In this study, we identified a new rice loss-of-function mutant, small organ size1 (smos1), that decreases the final size of various organs due to decreased cell size and abnormal microtubule orientation. SMOS1 encodes an unusual APETALA2 (AP2)-type transcription factor with an imperfect AP2 domain,...
ORGANISM(S): Oryza sativa Japonica Group 
2014-03-01 | E-GEOD-54357 | biostudies-arrayexpress
TranscriptomicsOverexpression of NtmybA2 in tobacco BY-2 cells
Promoters of many G2/M phase-specific genes in plants contain mitosis-specific activator (MSA) elements, which act as G2/M phase-specific enhancers and bind with R1R2R3-Myb transcription factors. A least three R1R2R3-Myb proteins are expressed in tobacco (Nicotiana tabacum). To examine the genome-wi...
ORGANISM(S): Nicotiana tabacum 
2010-05-22 | E-GEOD-14251 | biostudies-arrayexpress
TranscriptomicsCell cycle-regulated gene expression in tobacco cells
Tobacco BY-2 cells can be highly synchronized by treatment with an inhibitor of DNA synthesis, aphidicolin. For comprehensive understanding of cell cycle-regulated gene expression in tobacco, microarray analysis was conducted in synchronized cultures of BY-2 cells. Cells were treated with aphidicoli...
ORGANISM(S): Nicotiana tabacum 
2010-05-22 | E-GEOD-14250 | biostudies-arrayexpress
TranscriptomicsResponse of tobacco cells to Glucan elicitor
We have previously reported that the responses of tobacco tissues treated with AaGlucan are similar to those for laminarin [1]. To better understand the overall responses and signaling pathways in tobacco, we have identified here AaGlucan and laminarin early response genes, using a custom 16K BY-2 m...
ORGANISM(S): Nicotiana tabacum 
2007-10-16 | GSE6948 | GEO
TranscriptomicsThymic T-cell progenitor development is supported by membrane bound Kit ligand provided by a combined vascular endothelial and epithelial niche.
Gene expression analysis of purified KitL-tomato+ and KitL-tomato- thymic vascular endothelial cells, cortical and medullary thymic epithelial cells from 5 weeks old male kitL-tomato reporter mice Differentially expressed genes analysis of thymic stromal cells
ORGANISM(S): Mus musculus 
2016-01-18 | E-GEOD-62741 | biostudies-arrayexpress
ModelsFujita2013 - Parkinson's disease in a molecular interaction map
No description
2016-05-09 | MODEL1504290000 | BioModels
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