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TranscriptomicsMisregulation of the broad-range phospholipase C activity increases the susceptibility of Listeria monocytogenes to intracellular killing by neutrophils
Listeria monocytogenes is a facultative intracellular bacterial pathogen that tightly regulates the activities of various virulence factors during infection. A mutant strain (the plcBM-NM-^Tpro mutant) that has lost the ability to control the activity of a phospholipase C (PC-PLC) is attenuated a hu...
ORGANISM(S): Mus musculus 
2013-08-14 | E-GEOD-49820 | biostudies-arrayexpress
UnknownGenome-Wide Association Study of Event-Free Survival in Diffuse Large B-Cell Lymphoma Treated With Immunochemotherapy.
Not available
S-EPMC4879713 | biostudies-literature
UnknownEvent-free survival at 24 months is a robust end point for disease-related outcome in diffuse large B-cell lymphoma treated with immunochemotherapy.
Not available
S-EPMC3965261 | biostudies-literature
TranscriptomicsExpression analysis of the Theileria parva subtelomere-encoded variable secreted protein gene family
The protozoan parasite Theileria parva infects and transforms bovine lymphocytes inducing uncontrolled proliferation. The transforming schizont resides free in the host cell cytoplasm and it is assumed that proteins released from the parasite contribute to host cell transformation and parasite pers...
ORGANISM(S): Theileria parva 
2010-05-15 | E-GEOD-14093 | biostudies-arrayexpress
Transcriptomicsrec-Y2H matrix in S. cerevisiae screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins
RNA-binding proteins (RBPs) are crucial factors of post-transcriptional gene regulation and their modes of action are intensely investigated. At the center of attention are RNA motifs that guide where RBPs bind. However, sequence motifs recognized by RBPs are typically a poor predictor of RBP-RNA in...
ORGANISM(S): Saccharomyces cerevisiae 
2021-09-01 | E-MTAB-9612 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli K-12 W3110 strain grown at Ph5.7, 7.0, 8.5 reveals pH and anaerobiosis coregulate metabolism, multidrug transporters, and envelope composition
In Escherichia coli, pH-dependent gene expression varies with oxygen level. Anaerobic pH-dependent expression ratios were analyzed and compared to the published analysis of aerated cultures (Maurer et al, 2005). E. coli K-12 strain W3110 was cultured in closed tubes containing LBK broth buffered a...
ORGANISM(S): Escherichia coli 
2008-06-13 | E-GEOD-4556 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli K12 W3110 cultured in three different steady-state external pH conditions
Gene expression profiles of Escherichia coli K-12 W3110 were compared as a function of steady-state external pH. Cultures were grown with aeration to an optical density at 600 nm of 0.3 in potassium-modified Luria-Bertani medium buffered at pH 5.0, 7.0, and 8.7. For each of the three pH conditions, ...
ORGANISM(S): Escherichia coli K12 
2007-09-21 | E-GEOD-4511 | biostudies-arrayexpress
TranscriptomicsMicroRNA expression data from differentiation of human Cyt49 ESCs into definitive endoderm on MEF feeder layers
Pluripotent hESCs can differentiate into the three primary embryonic lineages (endoderm, mesoderm, ectoderm) as well as extraembryonic tissues. Definitive endoderm is the first step into the pathway to endoderm dreived tissues (pancreas, liver, gut, lung) We used microarrays to detail the changes i...
ORGANISM(S): Homo sapiens 
2010-07-30 | E-GEOD-16687 | biostudies-arrayexpress
TranscriptomicsRNA-seq of part of the root system of barley genotypes grown in an agricultural soil under controlled conditions
This is a comparative experiments of three barley genotypes harbouring allelic differences at a locus designated QRMC-3HS putatively implicated in the assembly of the microbial communities thriving at the root-soil interface, the so called rhizosphere microbiota. The RNA-seq experiment aimed at iden...
ORGANISM(S): Hordeum vulgare 
2022-01-26 | E-MTAB-11358 | biostudies-arrayexpress
TranscriptomicsMicroRNA expression data from differentiation of human H9 ESCs into definitive endoderm on MEF feeder layers
Pluripotent hESCs can differentiate into the three primary embryonic lineages (endoderm, mesoderm, ectoderm) as well as extraembryonic tissues. Definitive endoderm (DE) is the first step into the pathway to endoderm dreived tissues (pancreas, liver, gut, lung). We used microarrays to detail the cha...
ORGANISM(S): Homo sapiens 
2010-07-30 | E-GEOD-16689 | biostudies-arrayexpress
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