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ProteomicsExploring the extracellular landscape of cyanobacteria with deep exoproteomics
Extracellular proteins are involved in a remarkable number of fundamental processes in cyanobacteria. Yet, there is limited knowledge regarding the identity and function of these proteins. Here, we introduce a solid-phase enhanced protein aggregation workflow that enables description of the cyanobac...
ORGANISM(S): Picosynechococcus sp. PCC 11901 Nostoc punctiforme (strain ATCC 29133 / PCC 73102) Synechocystis sp. PCC 6803 
2024-08-29 | PXD047856 | Pride
Proteomics Cyanobacteria Diapasef 
ProteomicsRapid and ion mobility-resolved phosphoproteomics with dia-PASEF
Mass spectrometry-based phosphoproteomics has identified >150,000 post-translational phosphorylation sites in the human proteome. To disentangle their functional relevance, complex experimental designs that require increased throughput are now coming into focus. Here, we apply dia-PASEF on a trapped...
ORGANISM(S): Homo sapiens (Human) 
2022-10-26 | PXD033904 | Pride
Tims Technology Pasef Dia-pasef Phosphoproteomics Data-independent acquisition Ion mobility 
ProteomicsPeptide collision cross section of 22 post-translational modifications
The present study investigates the ion mobility characteristics of synthetic peptides carrying 22 different post-translational modifications by Ion Mobility-Mass Spectrometry. Samples were kindly provided by the ProteomeTools project.
ORGANISM(S): Homo sapiens (Human) 
2023-08-25 | PXD042416 | Pride
Tims Ptm Post-translational modifications Collision cross section Ccs Ion mobility 
ProteomicsµPhos: a scalable and sensitive platform for functional phosphoproteomics
Mass spectrometry has revolutionized cell signaling research by vastly simplifying the analysis of many thousands of phosphorylation sites in the human proteome. Defining the cellular response to perturbations in space and time is crucial for further illuminating functionality of the phosphoproteome...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2024-05-27 | PXD043370 | Pride
Dia Phosphoproteomics Method development 
UnknownClinical experience regarding safety and diagnostic value of cardiovascular magnetic resonance in patients with a subcutaneous implanted cardioverter/defibrillator (S-ICD) at 1.5 T.
Not available
S-EPMC7232845 | biostudies-literature
TranscriptomicsLINT - a novel dL(3)mbt containing complex represses malignant brain tumour signature genes
Drosophila melanogaster KC cells were treated with RNAi against dL(3)mbt, dLint1 or EGFP (control) and the resulting changes in gene expression were measured.
ORGANISM(S): Drosophila melanogaster 
2012-11-01 | E-MTAB-849 | biostudies-arrayexpress
UnknownDrosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.
Not available
S-EPMC4426361 | biostudies-literature
ProteomicsBoxCar acquisition method enables single shot proteomics at a depth of 10,000 proteins in 100 minutes
Great advances have been made in sensitivity and acquisition speed on the Orbitrap mass analyzer, enabling increasingly deep proteome coverage. However, these advances have been mainly limited to the MS2 level whereas ion beam sampling for the full MS scan remains extremely inefficient. Here we repo...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2019-10-04 | MSV000084418 | MassIVE
GenomicsEGAS00001000386-sc-20130520 - samples
We are sequencing the exomes of patients with paroxysmal neurological disorders mainly focusing on migraine and epilepsy. Cases are collected from performance sites of members of the International Headache Genetics consortium and EuroEPINOMICS. Most cases have a strong family history. The study samp...
EGAD00001000412 | EGA
GenomicsEGAS00001000048-sc-20110602 - samples
Paroxysmal neurological disorders
EGAD00001000021 | EGA
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