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GenomicsDissecting the retinoid-induced differentiation of F9 embryonal stem cells by integrative genomics [ChIP-seq]
Retinoic acid (RA) triggers physiological processes by activating heterodimeric transcription factors comprising retinoic acid (RARa,b,g) and retinoid X (RXRa,b,g) receptors. How a single signal induces highly complex temporally controlled networks that ultimately orchestrate physiological processes...
ORGANISM(S): Mus musculus 
2011-10-11 | E-GEOD-30538 | biostudies-arrayexpress
TranscriptomicsDissecting the retinoid-induced differentiation of F9 embryonal stem cells by integrative genomics [mRNA profiling]
Retinoic acid (RA) triggers physiological processes by activating heterodimeric transcription factors comprising retinoic acid (RARa,b,g) and retinoid X (RXRa,b,g) receptors. How a single signal induces highly complex temporally controlled networks that ultimately orchestrate physiological processes...
ORGANISM(S): Mus musculus 
2011-10-10 | E-GEOD-30537 | biostudies-arrayexpress
GenomicsSingle-tube Linear DNA amplification (LinDA) for robust ChIP-seq
Genome-wide profiling of transcription factors based on massive parallel sequencing of immunoprecipitated chromatin (ChIP-seq) requires nanogram amounts of DNA. Here we describe a high-fidelity, single-tube linear DNA amplification method (LinDA) for ChIP-seq and reChIP-seq with picogram DNA amounts...
ORGANISM(S): Homo sapiens 
2011-10-11 | E-GEOD-32332 | biostudies-arrayexpress
UnknownLOGIQA: a database dedicated to long-range genome interactions quality assessment.
Not available
S-EPMC4868109 | biostudies-literature
UnknownPOLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization.
Not available
S-EPMC3287170 | biostudies-literature
UnknownEpimetheus - a multi-profile normalizer for epigenomic sequencing data.
Not available
S-EPMC5429578 | biostudies-literature
TranscriptomicsAnalysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation
Disappearance of the Barr body has long been considered a hallmark of cancer, although whether this corresponds to epigenetic instability and transcriptional reactivation, or to genetic loss, has remained unclear. Here we show that in breast cancer cell lines as well as primary breast tumors, the in...
ORGANISM(S): Homo sapiens 
2015-01-22 | E-GEOD-62966 | biostudies-arrayexpress
UnknownComparative effectiveness of immediate antiretroviral therapy versus CD4-based initiation in HIV-positive individuals in high-income countries: observational cohort study.
Not available
S-EPMC4643831 | biostudies-literature
UnknownCause of Death and Predictors of All-Cause Mortality in Anticoagulated Patients With Nonvalvular Atrial Fibrillation: Data From ROCKET AF.
Not available
S-EPMC4943233 | biostudies-literature
UnknownDelaying surgery for patients with a previous SARS-CoV-2 infection.
Not available
S-EPMC7537063 | biostudies-literature
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