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MetabolomicsStability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
Inflammatory bowel disease (IBD) is associated with altered microbiota composition and metabolism, but it is unclear whether these changes precede inflammation or are the result of it since current studies have mainly focused on changes after the onset of disease. We previously showed differences in...
2017-07-14 | MTBLS432 | MetaboLights
MetabolomicsThe rumen metagenome and its metabolome in yaks associated with feeding regime

Background: Grazing yearly on pasture is a traditional practice for yaks, which cannot meet the requirements of yak products since the insufficient forage supplied in the cold season results in a long production cycle. An intensive feeding system increasing production efficiency has been selected...

2024-10-01 | MTBLS10856 | MetaboLights
MetabolomicsIntegrating metagenome-scale metabolic models and metabolomics to explore candidate biochemical interactions in cultivated Microcystis phycospheres

Favoured by global changes, freshwater cyanobacterial harmful blooms generate major ecological, economical and public health challenges. Microcystis, one of the most widespread cyanobacterial genera, grows within a phycosphere where specialised interactions with its microbiome occur, and...

2026-08-14 | MTBLS13909 | MetaboLights
OtherSoil metagenome from avocado orchards in Channybearup, Western Australia in 2024
Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.
ORGANISM(S): soil metagenome 
2025-06-15 | GSE298403 | GEO
ProteomicsA Metaproteomic Workflow for Sample Preparation and Data Analysis Applied to Mouse Faeces: 4
A Metaproteomic Workflow for Sample Preparation and Data Analysis Applied to Mouse Faeces: 1 MTD project_description Many diseases have been associated with gut microbiome abnormalities. The root cause of such diseases is not only due to bacterial dysbiosis, but also to change in bacterial functions...
ORGANISM(S): mouse gut metagenome 
2022-02-16 | PXD021932 | Pride
Mus musculus Taxonomy Metaproteomics Metagenome 
ProteomicsA Metaproteomic Workflow for Sample Preparation and Data Analysis Applied to Mouse Faeces: 1
Many diseases have been associated with gut microbiome abnormalities. The root cause of such diseases is not only due to bacterial dysbiosis, but also to change in bacterial functions, which are best studied by proteomic approaches. Although bacterial proteomics is well established, metaproteomics i...
ORGANISM(S): mouse gut metagenome 
2022-02-15 | PXD020695 | Pride
Mus musculus Taxonomy Metaproteomics Metagenome 
ProteomicsLC-MS/MS of autotrophic culture BP, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)
Nitrate-reducing iron(II)-oxidizing (NDFO) bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorl...
ORGANISM(S): freshwater sediment metagenome 
2021-05-17 | PXD023710 | Pride
Metagenome Nitrate reduction Iron oxidation Lc-ms/ms 
Genomicsflower metagenome
Ohanami Metagenome
PRJDB5174 | ENA
ProteomicsRelating human gut metagenome and metaproteome
Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and...
ORGANISM(S): human gut metagenome 
2017-07-19 | PXD005780 | Pride
Gut metagenome Gut metaproteome Metaproteomics 
GenomicsGut metagenome/FINRISK 2002 (Salosensaari et al. Nature Comms 2021)
The main goal of the project is the study the associations between the gut metagenome and human health. The dataset contains data for n=7211 FINRISK 2002 participants who underwent fecal sampling. Demultiplexed shallow shotgun metagenomic sequences were quality filtered and adapter trimmed using Atr...
EGAS00001005020 | EGA
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