Metamorpheus - OmicsDI

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Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
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Turku Bioscience Center, University of Turku and Åbo Akademi University, 20520 Turku, Finland. Medicity Research Laboratories, University of Turku, 20520 Turku, Finland Institute of Biomedicine, University of Turku, 2520 Turku, Finland (1)
Associate Professor, Vice president of the ISBMB society The Center for Nanoscience and Nanotechnology The Alexander Silberman Institute of Life Science Dept. of Biological Chemistry, room 1-637 The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 9190401, Israel (1)
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1) Department of Chemistry, Stanford University, Stanford, California, USA 2) Howard Hughes Medical Institute, Stanford, California, USA (1)
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Department of Immunology and Regenerative Biology and Department of Molecular Neuroscience, Weizmann Institute of Science, Rehovot 76100, Israel (1)
Department of Molecular Genetics, Weizmann Institute of Science; Rehovot, 7610001, Israel (1)
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Department of Chemistry, Yale University, New Haven, CT 06511, USA (1)
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Medicity Research Laboratories and Institute of Biomedicine, Faculty of Medicine, University of Turku, Finland Turku Bioscience Center, University of Turku and Åbo Akademi University, Finland (1)
Turku Bioscience Centre, University of Turku and Åbo Akadem University, 20520 Turku, Finland Medicity Research Laboratories, University of Turku, 20520 Turku, Finland Institute of Biomedicine, University of Turku, 20520 Turku, Finland Department of Oncology, Turku University Hospital, Turku, 20521, Finland (1)
Department of Chemistry University of Wisconsin-Madison (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, VU University Amsterdam, The Netherlands (1)
Yale Department of Chemistry (1)

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Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.

Not available

S-EPMC8377504 | biostudies-literature

Identification of MS-Cleavable and Non-Cleavable Chemically Crosslinked Peptides with MetaMorpheus

The present work describes a novel search program for the detection of both MS-cleavable and non-cleavable crosslinked peptides and it is the first software program reported with both capacities. The search strategy has been implemented in the computer program MetaMorpheus, which has a user-friendly...

ORGANISM(S): Escherichia coli

2018-07-16 | PXD009000 | Pride

Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.

Not available

S-EPMC6501566 | biostudies-literature

Analysis of O-glycoproteomics data with MS-Decipher, MetaMorpheus, MSFragger-Glyco and Mascot

We presented a user-friendly proteomic database search platform, MS-Decipher, for the identification of peptides from MS data. Two scoring schemes, rank score and hyperscore, could be used for peptide spectra matching. FDR controlling strategies could be used after searching, and it was found that M...

ORGANISM(S): Homo Sapiens (human)

2022-01-13 | PXD027004 | JPOST Repository

Internal Fragment Ions Disambiguate and Increase Identifications in Top-Down Proteomics.

Not available

S-EPMC8790932 | biostudies-literature

Multi-omic profiling of pathogen-stimulated primary immune cells

Objectives: To perform long-read transcriptome and proteome profiling of pathogen-stimulated peripheral blood mononuclear cells (PBMCs) from healthy donors. We aim to discover new transcripts and protein isoforms expressed during immune responses to diverse pathogens. Methods: PBMCs were exposed ...

ORGANISM(S): Homo sapiens (Human)

2023-09-16 | PXD045237 | Pride

Stimulation Immunity Pathogen Pbmc

The resistance response of Klebsiella pneumoniae against the antimicrobial peptide PaDBS1R1

Klebsiella pneumoniae is an antibiotic-resistant bacteria associated with severe infections, which has led to the search for new antimicrobial drugs to face these infections. Antimicrobial peptides (AMPs) are antimicrobials that exert anti-K. pneumoniae activity. Consequently, AMPs have been explore...

ORGANISM(S): Klebsiella pneumoniae

2024-01-26 | PXD033020 | Pride

Normalyzerde Metamorpheus Mplex G-ptm-d Proteomics Mass spectrometry

An Algorithm to Improve the Speed of Semi and Non-Specific Enzyme Searches in Proteomics.

Not available

S-EPMC7943061 | biostudies-literature

pGlyco3: Intact N- and O-glycopeptide search engine

Analyses of N- and O-glycopeptide using pGlyco3 as well as Byonic, MSFragger and MetaMorpheus. N-glycopeptides and O-Man glycopeptides of fission yeast and budding yeast are also analyzed using pGlyco3.

ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Schizosaccharomyces Pombe (ncbitaxon:4896)

2021-01-27 | MSV000086771 | MassIVE

Automated Assignment of Proteoform Classification Levels.

Not available

S-EPMC8764746 | biostudies-literature

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