Methanogenesis - OmicsDI

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Unknown (1036)
Genomics (499)
Transcriptomics (44)
Proteomics (26)
Models (11)
Metabolomics (8)

Organisms

Methanococcus maripaludis S2 (32)
Andropogon gerardi (15)
Bacteria (15)
Borrelia (15)
Botrytis cinerea (15)
Candida albicans (15)
Canis lupus familiaris (15)
Clostridium perfringens (15)
Cnidaria (15)
Eukaryota (15)
Fasciola (15)
Methanosarcina barkeri (4)
Methanosarcina acetivorans (3)
Methanothermobacter thermautotrophicus (2)
Methanosarcina mazei (2)
Butyrivibrio proteoclasticus B316 (2)
Methanobrevibacter ruminantium (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Methanosarcina barkeri MS (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Methanobrevibacter ruminantium M1 (1)
Blautia hydrogenotrophica DSM 10507 (1)
Marvinbryantia formatexigens DSM 14469 (1)
Methanosarcina acetivorans C2A (1)
Methanocella conradii (1)
Pelotomaculum thermopropionicum (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Methanothermobacter marburgensis (1)
anaerobic bacterium foal30 (1)

Organisms

Methanococcus maripaludis S2 (15)
soil metagenome (15)
anaerobic digester metagenome (12)
bioreactor metagenome (9)
sludge metagenome (8)
sediment metagenome (6)
bovine gut metagenome (4)
biofilm metagenome (4)
marine sediment metagenome (4)
Methanosarcina barkeri (3)
gut metagenome (3)
freshwater sediment metagenome (3)
peat metagenome (3)
Methanocalculus sp. 1H1Hc7 (2)
Methanosarcina acetivorans (2)
goat gut metagenome (2)
coal metagenome (2)
subsurface metagenome (2)
fermentation metagenome (2)
wastewater metagenome (2)
Ovis aries (2)
freshwater metagenome (2)
Methanothrix harundinacea 6Ac (1)
Methanosarcina hadiensis (1)
Methanobrevibacter ruminantium (1)
Methanoculleus marisnigri (1)
Methanimicrococcus blatticola (1)
Methanobrevibacter smithii DSM 11975 (1)
Methanomethylophilus alvi (1)
Rhodoferax sp. BLA1 (1)

Repository

ENA (499)
biostudies-arrayexpress (22)
geo (22)
pride (15)
BioModels (11)
MassIVE (7)
MetaboLights (6)
iProX (4)
GNPS (2)

Tissue

Cell culture (3)
Extracellular vesicle (1)
Whole body (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (12)
Mass spectrometry assay (5)
Bottom-up proteomics (2)
Mass spectrometry (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (4)
Q Exactive (3)
TripleTOF 5600 (3)
Liquid Chromatography MS - negative - reverse-phase (3)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (31)
2026 (8)
2024 (8)
2025 (7)
2021 (6)
2015 (4)
2016 (4)
2010 (4)
2023 (4)
2005 (3)
2019 (3)
2014 (1)
2011 (1)
2009 (1)
2022 (1)
2018 (1)
2020 (1)

CHEBI ID

CHEBI:62890 (3)
CHEBI:139151 (3)
CHEBI:85106 (3)
CHEBI:40356 (3)
CHEBI:67138 (3)
CHEBI:64076 (3)
CHEBI:64074 (3)
CHEBI:64077 (3)
CHEBI:64075 (3)
CHEBI:70731 (3)
CHEBI:13388 (3)
CHEBI:35098 (3)
CHEBI:34773 (3)
CHEBI:34606 (3)
CHEBI:74004 (3)
CHEBI:74007 (3)
CHEBI:134176 (3)
CHEBI:74853 (3)
CHEBI:71517 (3)
CHEBI:58838 (3)
CHEBI:58837 (3)
CHEBI:57677 (3)
CHEBI:60464 (3)
CHEBI:65078 (3)
CHEBI:48595 (3)
CHEBI:73682 (3)
CHEBI:27973 (3)
CHEBI:131350 (3)
CHEBI:45506 (3)
CHEBI:58556 (3)

Metabolite Name

-L-Fucopyranose (2)
Metab_20532 (2)
Metab_20424 (2)
Metab_20233 (2)
Metab_20214 (2)
Metab_20190 (2)
Metab_20166 (2)
Metab_20011 (2)
Metab_19993 (2)
Metab_19868 (2)
Metab_19800 (2)
Metab_19693 (2)
Metab_19660 (2)
Metab_19581 (2)
Metab_19447 (2)
Metab_19434 (2)
Metab_19370 (2)
Metab_19359 (2)
Metab_19357 (2)
Metab_19336 (2)
Metab_19283 (2)
Metab_19276 (2)
Metab_19272 (2)
Metab_19244 (2)
Metab_19238 (2)
Metab_19050 (2)
Metab_19023 (2)
Metab_18967 (2)
Metab_18946 (2)
Metab_18889 (2)

IsPrivate

False (11)

Model Flag

Non Kinetic (8)

Submitter Keywords

FROG (6)

First Public Date

2026 (90)
2024 (65)
2025 (57)
2023 (50)
2021 (34)
2020 (32)
2019 (28)
2017 (27)
2014 (24)
2022 (23)
2018 (23)
2016 (19)
2015 (17)
2013 (9)
2011 (1)

Modelling Approach

Constraint-based model (7)

Study type

Transcription profiling by tiling array (14)
Transcription profiling by array (5)
RNA-seq of coding RNA (3)

Release Date

2024 (99)
2025 (95)
2022 (88)
2019 (87)
2023 (80)
2021 (80)
2020 (69)
2018 (69)
2016 (65)
2015 (59)
2017 (51)
2013 (42)
2014 (41)
2012 (22)
2011 (21)
2008 (12)
2009 (10)
2026 (10)
2010 (9)
2007 (9)
2004 (9)
2005 (8)
2003 (5)
2002 (5)
2006 (4)
1998 (3)
2001 (2)
2000 (2)
1999 (2)

Lab affiliation

Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
Applied Biosciences and Process Engineering, Anhalt University of Applied Sciences, Microbiology, Bernburger Straße 55, 06354 Köthen, Germany (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Department of Food Safety and Environmental Health, University of Helsinki, Finland (1)
Department of Microbiology and Immunology, Montana State University, Bozeman, Montana, 59717 (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systeme Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Helmholtz-Centre for Environmental Research - UFZ GmbH Department Molecular Systems Biology Permoserstrasse 15 04318 Leipzig, Germany (1)
Institut Pasteur, Université Paris Cité, Archaeal Virology Unit, 75015 Paris, France (1)
Institute of Biological Chemistry, Taipei, Taiwan (1)
Institute of Subtropical Agriculture,Chinese Academy of Sciences (1)
Professor in Environmental Microbiology and Biotechnology,Section for Biotechnology Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
University of Tübingen Center for Applied Geosciences Environmental Biotechnology Group (1)
University of Washington Department of Genome Sciences (1)

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Phosphoproteomic analysis of methanoarchaeon Methanohalophilus portucalensis FDF1T reveals diverse functions in methanogenesis and osmoadaptation

Methane is a well-known factor in green house effect and also could be an alternative energy, which produced via methanogenesis by methanogenic archaea. Methanohalophilus portucalensis FDF1T is a halophilic methylotrophic methanogen and has been used as a model to study osmoadaptation in fluctuated ...

ORGANISM(S): Methanohalophilus

2016-07-05 | PXD002024 | Pride

anaerobe in ADC for sludge methanogenesis

anaerobe in ADC for sludge methanogenesis Metagenome

PRJNA670626 | ENA

Methanogenesis in AD

Methanogenesis in AD Raw sequence reads

PRJNA525781 | ENA

Organic overloading-induced inhibition reactor with GAC to restore methanogenesis

GAC to restore methanogenesis in anaerobic reactor

PRJNA1499861 | ENA

Hydrogenotrophic Methanogenesis Under Alkaline Conditions.

Not available

S-EPMC7744349 | biostudies-literature

Steady-state samples of Methanococcus maripaludis MM901 grown on formate under hydrogen limited conditions

Hydrogenotrophic methanogenic Archaea are defined by a H2 requirement for growth. Despite this requirement, many hydrogenotrophs are also capable of growth with formate as an electron donor for methanogenesis. Hydrogenotrophs respond to H2 starvation both phenotypically and at the level of gene expr...

ORGANISM(S): Methanococcus maripaludis S2

2013-05-03 | E-GEOD-42111 | biostudies-arrayexpress

Several ways one goal-methanogenesis from unconventional substrates.

Not available

S-EPMC7374477 | biostudies-literature

Richards2016 - Genome-scale metabolic reconstruction of Methanococcus maripaludis (iMR539)

Richards2016 - Genome-scale metabolic reconstruction of Methanococcus maripaludis (iMR539) This model is described in the article: Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis. Richards MA, Lie TJ, Zhang J, R...

2024-10-15 | BIOMD0000001099 | BioModels

FROG

Metatranscriptomic Evidence for Magnetite Nanoparticle-Stimulated Acetoclastic Methanogenesis under Continuous Agitation.

Not available

S-EPMC6856328 | biostudies-literature

Inhibition of Rumen Methanogenesis and Ruminant Productivity: A Meta-Analysis.

Not available

S-EPMC6018482 | biostudies-literature

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