Miettinen P P - OmicsDI

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Unknown (194)
Proteomics (11)
Transcriptomics (6)
Metabolomics (2)

Organisms

Homo sapiens (13)
Staphylococcus aureus (2)
Mus musculus (1)
Propionibacterium freudenreichii subsp. freudenreichii (1)

Repository

pride (11)
biostudies-arrayexpress (6)
MetaboLights (2)

Tissue

Blood cell (2)
Cell suspension culture (2)
Leukocyte (2)
Acute myeloid leukemia cell (1)
Adrenal medulla (1)
Blood (1)
Cell culture (1)
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Disease

Acute myeloid leukemia (3)
Acute leukemia (2)
Breast cancer (1)
Lung small cell carcinoma (1)
Lymphoma (1)
Paraganglioma (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (8)
Data-dependent acquisition (3)
Mass spectrometry (2)
Bottom-up proteomics (2)

Instrument Platform

Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)

Publication Date

2022 (3)
2013 (2)
2024 (2)
2023 (2)
2021 (2)
2015 (1)
2014 (1)
2011 (1)
2010 (1)
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2020 (1)
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CHEBI ID

CHEBI:1148 (1)
CHEBI:131607 (1)
CHEBI:139424 (1)
CHEBI:141136 (1)
CHEBI:144042 (1)
CHEBI:145092 (1)
CHEBI:145093 (1)
CHEBI:145094 (1)
CHEBI:145095 (1)
CHEBI:145096 (1)
CHEBI:145097 (1)
CHEBI:145098 (1)
CHEBI:145099 (1)
CHEBI:145100 (1)
CHEBI:145101 (1)
CHEBI:145102 (1)
CHEBI:145103 (1)
CHEBI:145104 (1)
CHEBI:149529 (1)
CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15843 (1)
CHEBI:15864 (1)
CHEBI:15908 (1)
CHEBI:16000 (1)
CHEBI:16113 (1)
CHEBI:16196 (1)
CHEBI:16243 (1)
CHEBI:16384 (1)

Metabolite Name

(R*,R*)-2,3-Dihydroxybutanoic acid, tris(trimethylsilyl)- (1)
1,5-Anhydrohexito (1)
1,5-di-O-E-caffeoylquinic acid (1)
1-Dodecanol (1)
1-Monopalmitin (1)
1-Octadecanol (1)
11-Eicosenoic acid (E)- (1)
15-hydroxy-eremantholide B (1)
15-hydroxy-eremantholide b (1)
1b,2a-epoxy tagitinin C (1)
2,4-Dihydroxybutanoic acid (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Hydroxybutyric acid (1)
2-Ketoisocaproic acid mo-tms (1)
2-Oleoylglycerol (1)
2-Palmitoylglycerol (1)
2-Phenylisopropanol (1)
2-oxo-8b-methacryloyloxy-guaia-3,10(14),11(13)-trien-6a,12-olide (1)
3,4',5-trihydroxy-7-methoxyflavone (1)
3,4,5-Trihydroxypentanoic acid, tetrakis(trimethylsilyl)- (1)
3,4,5-tri-O-E-caffeoylquinic acid (1)
3,4-Dihydroxybutanoic acid (1)
3,4-di-O-E-caffeoylquinic acid (1)
3,4-dimethoxycinnamic acid (1)
3,5-di-O-E-caffeoylquinic acid (1)
3-Creatinine (1)
3-Hydroxybutyric acid (1)
3-Hydroxyisovaleric acid (1)
3-Indoleacetic acid (1)
3-O-caffeoyl-2-(2-butyl)-2-hydroxybutanedioic acid (1)

Study type

Transcription profiling by array (4)
Methylation profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2022 (26)
2021 (23)
2024 (18)
2023 (18)
2020 (18)
2025 (13)
2019 (12)
2017 (12)
2015 (11)
2014 (10)
2011 (7)
2013 (6)
2018 (6)
2016 (6)
2026 (4)
2010 (3)
2012 (2)
2009 (1)
2008 (1)
2007 (1)
2004 (1)
1999 (1)

Lab affiliation

Head of Proteomics (3)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic (1)
Bioscience Institute,Faculty for Medical Sciences at Newcastle University. Newcastle-Upon-Tyne United Kingdom NE24HH (1)
Cell Signalling & Proteomics Group, Centre for Genomics & Computational Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London, UK (1)
Cell Signalling and Proteomics Group, Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom (1)
Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
MRC Protein Phosphorylation Unit, University of Dundee, Dundee, United Kingdom (1)
Systems Pharmacology lab, Department of Biochemistry and Developmental Biology, Faculty of Medicine, University of Helsinki, Finland (1)

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Surfaceome and exoproteome analysis of Staphylococcus aureus and Pseudomonas aeruginosa mono- and co-culture biofilms

Staphylococcus aureus and Pseudomonas aeruginosa are bacterial pathogens that have been shown to co-exist in biofilms related to numerous infections. Although the interaction between these two species is competitive, both partially benefit from the coexistence. In this study, we exhaustively charact...

ORGANISM(S): Staphylococcus aureus

2021-09-09 | PXD023445 | Pride

Blood-Based Biomarkers Are Associated with Disease Recurrence and Survival in Gastrointestinal Stroma Tumor Patients after Surgical Resection.

Not available

S-EPMC4959723 | biostudies-literature

Aerobic Adaptation and Metabolic Dynamics of Propionibacterium freudenreichii DSM 20271: Insights from Comparative Transcriptomics and Surfaceome Analysis

Propionibacterium freudenreichii (PFR) DSM 20271 is a bacterium known for its ability to thrive in diverse environments and produce vitamin B12. Despite its anaerobic preference, recent studies have elucidated its ability to prosper in the presence of oxygen, prompting a deeper exploration of its ph...

ORGANISM(S): Propionibacterium freudenreichii subsp. freudenreichii

2024-09-09 | PXD051703 | Pride

Vitamin b12 Aerobic adaptation Surfaceome analysis Propionibacterium freudenreichii

Oncogenic SDH mutation underlies global epigenomic instability in gastrointestinal stromal tumor

We have discovered a striking connection between mitochondrial dysfunction and epigenomic instability, manifested by global biallelic DNA cytosine 5-methylation and loss of 5-hydroxymethycytosine within succinate dehydrogenase (SDH)-null gastrointestinal stromal tumors (GIST) relative to those beari...

ORGANISM(S): Homo sapiens

2013-05-22 | E-GEOD-34387 | biostudies-arrayexpress

Postia caesia complex (Polyporales, Basidiomycota) in temperate Northern Hemisphere.

Not available

S-EPMC7259241 | biostudies-literature

Randomized Study of Rivaroxaban vs Placebo on Disease Progression and Symptoms Resolution in High-Risk Adults With Mild Coronavirus Disease 2019.

Not available

S-EPMC8522357 | biostudies-literature

A multigenerational study on phenotypic consequences of the most common causal variant of HNF1A-MODY.

Not available

S-EPMC8894160 | biostudies-literature

Surfaceome and Exoproteome Dynamics in Dual-Species Pseudomonas aeruginosa and Staphylococcus aureus Biofilms.