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ProteomicsLight-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks
Delineating the extracellular interaction network of the cell surface proteotype (the surfaceome) is fundamental to understanding cellular signaling function in health and disease. Here, we developed LUX-MS, an optoproteomic technology that enables the spatiotemporal and proteome-wide study of surfa...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) Listeria monocytogenes serotype 4b Listeria phage A500 Escherichia coli 
2021-06-14 | PXD020481 | Pride
Lc-ms/ms 
ProteomicsHeart surfaceome profiling using biotin capture
Cell surface proteins (surfaceome) represent key signalling and interaction molecules for therapeutic targeting, biomarker profiling, and cellular phenotyping. Understanding the surfaceome of complex tissues including the heart is essential to investigate membrane composition and function in physiol...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
MSV000095912 | MassIVE
ProteomicsDe novo Classification of Mouse B Cell Types using Surfaceome Proteotype Maps
System-wide quantification of the cell surface proteotype and identification of extracellular glycosylation sites is challenging when sample is limiting. We miniaturized and automated the previously described Cell Surface Capture technology increasing sensitivity, reproducibility, and throughput. We...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2019-12-11 | PXD013627 | Pride
Flow cytometry Cell surface capture Cell surface proteome Hrm B-cell development Dda Mouse model Classification Affinity purification Dia Lc-ms Proteotype Autocsc Csc Surfaceome 
ProteomicsUltrafast and Chemoselective Biotinylation of Living Cell Surface for Time-Resolved Surfaceome Analysis - final
Cell surface proteins participate in many important biological processes such as cell-to-cell interaction, signal transduction, cell adhesion, and protein transportation. In-depth study of the cell surface protein group is of great significance. Nevertheless, detection and analysis of the surfaceome...
ORGANISM(S): Homo Sapiens 
PXD053733 |
ProteomicsThe surfaceome of chondrogenic cells
Chondrogenesis, the process through which cartilage forms, has implications for cartilage repair and osteoarthritis (OA) management. In this study, we present the first comprehensive quantitative analysis of the surfaceome of chondrogenic cells using a well-established in vitro chondrogenic model. B...
ORGANISM(S): Gallus gallus (Chicken) 
2026-01-19 | PXD064013 | Pride
Glycocapture Osteoarthritis Cartilage Surfaceome  chondrogenesis Cartilage regeneration 
GenomicsImmunotherapeutic targeting of surfaceome heterogeneity in AML
Immunotherapeutic targeting of surfaceome heterogeneity in AML
PRJNA1010863 | ENA
ProteomicsSurfaceome dynamics and surface trafficking during neuronal development and synaptic plasticity
Surface proteins are of fundamental importance for formation of synaptic connections and activity-dependent plasticity. Here, we used a spatiotemporally resolved cell-surface proteotype analysis to characterize the neuronal surface-exposed proteome, or surfaceome, during neuronal development and syn...
ORGANISM(S): Rattus norvegicus (Rat) 
2020-10-05 | PXD014790 | Pride
Synapse Surface Neuroproteomics Spatial Surfaceome 
UnknownThe in silico human surfaceome.
Not available
S-EPMC6243280 | biostudies-literature
ProteomicsThe Leucegene AML surfaceome atlas: immunotherapeutic target identification in AML
We exploited the extensive genomic diversity of the Leucegene cohort of primary human AML specimens to provide an overview of the human AML surfaceome. Due to high cell number requirements, surface proteomics has been underexploited in AML so far, although surface proteome analysis of AML cell lines...
ORGANISM(S): Homo sapiens (Human) 
2024-05-21 | PXD043772 | Pride
Acute myeloid leukemia Surfaceome Pan-aml antigens 
UnknownSurfaceome of Leptospira spp.
Not available
S-EPMC1201201 | biostudies-literature
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