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ProteomicsDe novo Classification of Mouse B Cell Types using Surfaceome Proteotype Maps
System-wide quantification of the cell surface proteotype and identification of extracellular glycosylation sites is challenging when sample is limiting. We miniaturized and automated the previously described Cell Surface Capture technology increasing sensitivity, reproducibility, and throughput. We...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2019-12-11 | PXD013627 | Pride
Flow cytometry Cell surface capture Cell surface proteome Hrm B-cell development Dda Mouse model Classification Affinity purification Dia Lc-ms Proteotype Autocsc Csc Surfaceome 
ProteomicsEnzymatic dissociation induces transcriptional and proteotype bias in brain cell populations
Different cell isolation techniques exist for transcriptomic and proteotype profiling of brain cells. Here we show that standard enzymatic digestion of brain tissue at 37°C induces profound alterations in the transcriptome and proteotype of specific brain cells, as compared to cold mechanical dissoc...
ORGANISM(S): Mus musculus (Mouse) 
2021-09-08 | PXD015592 | Pride
Brain cell types enzymatic digestion bias isolation 
GenomicsEnzymatic dissociation induces transcriptional and proteotype bias in brain cell populations
Enzymatic dissociation induces transcriptional and proteotype bias in brain cell populations
PRJNA601729 | ENA
TranscriptomicsEnzymatic dissociation induces transcriptional and proteotype bias in brain cell populations
Different cell isolation techniques exist for transcriptomic and proteotype profiling of brain cells. Here, we provide a systematic investigation of the influence of different cell isolation protocols on transcriptional and proteotype profiles in mouse brain tissue by taking into account single-cell...
ORGANISM(S): Mus musculus 
2020-10-26 | GSE143796 | GEO
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, the third most common foodborne disease. Many different Listeria strains and seroptypes exist, however a proteogenomic resource which would provide a basis for bridging the gap in the molecular understanding b...
ORGANISM(S): Listeria Monocytogenes Egd-e (ncbitaxon:169963) Listeria Monocytogenes Str. Scott A (ncbitaxon:1027396) 
2019-06-01 | MSV000083881 | MassIVE
UnknownEnzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations.
Not available
S-EPMC7663484 | biostudies-literature
UnknownClassification of mouse B cell types using surfaceome proteotype maps.
Not available
S-EPMC6915781 | biostudies-literature
UnknownStandardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies.
Not available
S-EPMC7568553 | biostudies-literature
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, a potentially fatal foodborne disease. Many different Listeria strains and serotypes exist, buthowever a proteogenomic resource that which would allow to bridges the gap in ourthe molecular understanding of th...
ORGANISM(S): Listeria Monocytogenes 
2021-01-26 | PXD014294 | panorama
ProteomicsProteomic and phosphoproteomic profilings in fibroblasts of 11 common mammalian species
A central goal of modern biology is to understand the molecular basis of phenotype evolution between species. Previously, the evolutionary profiling at the molecular level has been largely limited to the nucleotide level. Nevertheless, the genotype is translated to proteotype through comprehensive a...
ORGANISM(S): Bos taurus (Bovine) Sus scrofa (Pig) Homo sapiens (Human) Oryctolagus cuniculus (Rabbit) Canis lupus Monodelphis domestica Felis catus (Cat) (Felis silvestris catus) Rattus norvegicus (Rat) Ovis aries Macaca mulatta (Rhesus macaque) Equus caballus (Horse) 
2022-09-22 | PXD028979 | Pride
Phosphoproteomics Dia-ms Multiple species Quantitative proteomics 
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