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MetabolomicsSuboxic DOM is bioavailable to surface prokaryotes in a simulated overturn of an oxygen minimum zone, Devil’s Hole, Bermuda
Oxygen minimum zones (OMZs) are expanding due to increased sea surface temperatures, subsequent increased oxygen demand through respiration, reduced oxygen solubility, and thermal stratification driven in part by anthropogenic climate change. Devil's Hole, Bermuda is a model ecosystem to study OMZ m...
2024-02-27 | MTBLS8122 | MetaboLights
MetabolomicsNano-Kinetic Implant Surface Mediates Osteo-Antibacterial Synergy through Electromagnetic-Mechanical Coupling
This untargeted LC-MS/MS metabolomics study investigates metabolic differences between laboratory reference Staphylococcus aureus and periprosthetic implant-associated Staphylococcus aureus in bacterial suspension samples associated with implant surface lavage. The metabolomics dataset forms part of...
2026-08-28 | MTBLS15301 | MetaboLights
MetabolomicsThe correlation between leaf-surface and leaf-tissue secondary metabolites: a case study with pyrrolizidine alkaloids in Jacobaea hybrid plants
Introduction: Usually whole plant or whole leaf extracts are analyzed to study the chemical ecology of insect-plant interactions. For herbivore species the contact with the leaf surface enables them to estimate the quality of the plant. The relationship between the leaf-surface and leaf-tissue secon...
2018-05-01 | MTBLS429 | MetaboLights
MetabolomicsSalmonella enterica and Pseudomonas syringe uniquely alter the exometabolomic profile of the Arabidopsis leaf surface
To successfully colonize healthy plants, bacterial pathogens must overcome stressful conditions on the leaf surface before entering the leaf tissues through natural openings. In this study, we developed an approach to examine the exometabolomic profiles of the leaf surface when exposing plants with ...
2025-06-17 | MTBLS9884 | MetaboLights
MetabolomicsCharacterization of Phytoplankton-Excreted Metabolites Mediating Carbon Flux through the Surface Ocean

The marine labile dissolved organic carbon (DOC) pool is a dynamic reservoir of thousands of molecules. After excretion or release by phytoplankton and other microbes, metabolites are rapidly consumed, resulting in very low standing concentrations (picomolar to low nanomolar). To date, marine phy...

2026-03-17 | MTBLS12895 | MetaboLights
MetabolomicsMetabolites from surface seawater collected in Narragansett Bay
In aquatic environments, the production and consumption of organic compounds is directly tied to the metabolic potential of the in situ microbial community. The community’s metabolic potential can be assessed using metatranscriptomics, which is a measure of gene expression in the environment. More r...
2016-01-14 | MTBLS293 | MetaboLights
MetabolomicsTear lipidomics profiling reveals inflammatory dry eye disease-associated lipid metabolic remodeling at the ocular surface
This study aimed to investigate whether inflammatory dry eye disease (DED) is accompanied by abnormal lipid metabolic remodeling at the ocular surface. Tear samples were collected from patients with DED and matched healthy controls. Lipidomics profiling was performed using LC–MS/MS with a standardiz...
2026-04-03 | MTBLS14218 | MetaboLights
MetabolomicsTear lipidomics profiling reveals ocular-surface lipid remodeling associated with organelle stress in a mouse model of inflammatory dry eye disease
This study aimed to determine whether dry eye disease (DED) is accompanied by ocular-surface lipid remodeling and whether such changes converge on organelle stress–associated pathways in a mouse model of inflammatory dry eye. Tear samples were collected from mice and analyzed by LC–MS/MS–based non-t...
2026-04-04 | MTBLS14217 | MetaboLights
TranscriptomicsSurface sensing in Vibrio parahaemolyticus triggers a programme of gene expression that promotes colonization and virulence
Vibrio parahaemolyticus senses surfaces via impeded rotation of its polar flagellum. We have exploited this surface-sensing mechanism to trick the organism into thinking it is on a surface when it is growing in liquid. This facilitated studies of global gene expression in a way that avoided many of ...
ORGANISM(S): Vibrio parahaemolyticus 
2010-12-15 | E-GEOD-18763 | biostudies-arrayexpress
MetabolomicsPatterns in metabolite pools show that phytoplankton leave a taxon-specific signature on particulate carbon: Surface samples from the North Pacific Subtropical Gyre to North Pacific Transition Zone
Not available
ORGANISM(S): Natural mixed marine microbial community 
ST001410 | MetabolomicsWorkbench
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