Min Deborah D - OmicsDI

Show results for

Transcriptomics (25)
Proteomics (8)
Genomics (5)
Unknown (5)
Metabolomics (4)

Organisms

Homo sapiens (19)
Mus musculus (4)
Sparus aurata (2)
Rattus norvegicus (2)
Gallus gallus (2)
Pseudo-nitzschia multiseries (1)
Lactobacillus johnsonii (1)
Bifidobacterium longum (1)
Fundulus heteroclitus (1)
Neurospora crassa (1)
Burkholderia cenocepacia (1)
Candida albicans (1)
Drosophila melanogaster (1)
Armillaria sp. CMW 4456 (1)
Basidiomycota (1)
Canis lupus familiaris (1)
Equus caballus (1)
Fungi (1)
Viruses (1)

Repository

biostudies-arrayexpress (29)
pride (7)
MetaboLights (4)
EGA (1)
MassIVE (1)

Tissue

Blood plasma (1)
Blood serum (1)
Culture fluid (1)
Dendritic cell (1)
Egg (1)
Epithelial cell (1)
Extracellular matrix secreting cell (1)
Mycelium (1)
Tendon (1)
Vegetative cell (sensu Fungi) (1)

Disease

Disease free (2)
Influenza (2)
COVID-19 (1)
Gestational choriocarcinoma (1)

Technology Type

Mass Spectrometry (7)
Mass spectrometry (3)
SWATH MS (3)
Shotgun proteomics (3)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Proteogenomics (1)

Instrument Platform

5975C Series GC/MSD (Agilent) (2)
ScanArray Lite [PerkinElmer] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Orbitrap Fusion (1)
6520 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2013 (5)
2015 (4)
2012 (4)
2022 (4)
2014 (3)
2010 (3)
2005 (3)
2026 (2)
2018 (2)
2011 (2)
2016 (2)
2023 (1)
2008 (1)
2007 (1)
2025 (1)
2024 (1)
2017 (1)
2020 (1)

CHEBI ID

CHEBI:14336 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:17268 (2)
CHEBI:17327 (2)
CHEBI:17351 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:18300 (2)
CHEBI:22470 (2)
CHEBI:27432 (2)
CHEBI:27693 (2)
CHEBI:28260 (2)
CHEBI:28757 (2)
CHEBI:28842 (2)
CHEBI:30769 (2)
CHEBI:33508 (2)
CHEBI:6650 (2)
CHEBI:138665 (1)
CHEBI:138666 (1)
CHEBI:138667 (1)
CHEBI:139369 (1)
CHEBI:139373 (1)
CHEBI:139374 (1)
CHEBI:15903 (1)
CHEBI:15963 (1)
CHEBI:15999 (1)
CHEBI:16000 (1)
CHEBI:16010 (1)
CHEBI:16016 (1)

Metabolite Name

Adenine (2)
Adenosine (2)
Alanine (2)
Arginine (2)
Cytosine (2)
DL-Lysine (2)
Gly-Leu (2)
Guanine (2)
Histamine (2)
Histidine (2)
L-Proline (2)
(+)-.alpha.-tocopherol (1)
(+)-Allopumiliotoxin 267A (1)
(+)-Eudesmin (1)
(+)-catechin (1)
(+)-isocorydine (1)
(-)-.alpha.-kainic acid (1)
(-)-Lupinine (1)
(-)-epigallocatechin (1)
(-)-myrtenol (1)
(.+/-.)-Laudanosine (1)
(1R,2S)-1-(7,8-Dihydro-6-pteridinyl)-1,2-propanediol (1)
(1S,5R)-5-Isopropenyl-2-methyl-2-cyclohexen-1-yl beta-D-glucopyranoside (1)
(2E)-hexadecenoylcarnitine (1)
(2E,2'E)-3,3'-[2,4-Bis(1,3-benzodioxol-5-yl)-1,3-cyclobutanediyl]bis[1-(1-piperidinyl)-2-propen-1-one] (1)
(2R,5R,6R)-3-[(1E,3E)-hepta-1,3-dien-1-yl]-5,6-dihydroxy-2-(hydroxymethyl)cyclohexan-1-one (1)
(2S)-3-Hydroxy-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Phenyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-4-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)pentanoic acid (non-preferred name) (1)

Study type

Transcription profiling by array (18)
ChIP-seq (3)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (5)
2015 (4)
2012 (4)
2023 (3)
2014 (3)
2010 (3)
2005 (3)
2018 (2)
2011 (2)
2026 (1)
2008 (1)
2007 (1)
2025 (1)
2022 (1)

Lab affiliation

Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Boston University School of Medicine (1)
Department of Biochemistry Center for Biomedical Mass Spectrometry Boston University School of Medicine (1)
Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI),Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, South Africa (1)
Head of Research Group University Hospital Zurich Department of Obstetrics Perinatal Pharmacology and Biochemistry Schmelzbergstrasse 12 / PF 125 Path G51a 8091 Zurich (1)
Institute of Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS, UK (1)

Previous page
1 / 5
You're on page 1
page 2
page 3
page 4
page 5
Next page

Sort by:

Relevance

Page size

Transcription profiling of mouse wild-type and TTP-deficient fibroblast cell lines to identify TTP mRNA targets

Tristetraprolin (TTP) is a tandem CCCH zinc finger protein that was identified through its rapid induction by mitogens in fibroblasts. Studies of TTP-deficient mice, and cells derived from them, showed that TTP could bind to certain AU-rich elements in mRNAs, leading to increases in the rates of mRN...

ORGANISM(S): Mus musculus

2008-11-22 | E-GEOD-5324 | biostudies-arrayexpress

Single-cell RNA and B cell receptor profiling of B cell response to SARS-CoV-2 vaccination

We generated single-cell transcriptomic and BCR sequencing data of B cells from peripheral blood samples taken from a SARS-CoV-2-antigen-naive cohort being vaccinated with the SARS-CoV-2 mRNA-1273 vaccine. Blood samples were collected at the baseline timepoint D-1 (i.e. one day prior to the initial ...

ORGANISM(S): Homo sapiens

2026-05-08 | E-MTAB-16531 | biostudies-arrayexpress

Bifidobacterium longum mutants and resistance to Heat-Shock

Transcriptional profiling of Bifidobacterium longum mutants versus wt strain in exponentional phase, with or without heat-shock treatment, and in stationary phase Keywords: Characterization of natural mutants Two B. longum mutants (NCC2912 and NCC2913) were analysed versus the wt strain NCC2705 in ...

ORGANISM(S): Bifidobacterium longum

2010-05-17 | E-GEOD-14628 | biostudies-arrayexpress

Transcription profiling of wild type and hog1 Candida albicans subjected to environmental stresses that are known to activate the Hog1 Stress-activated Protein Kinase

Based on studies in S. pombe (Chen et al., 2003), we predicted that conditions which activate C. albicans Hog1 would result in the induction of a common set of genes that are regulated by this SAPK (Smith et al., 2004). Hence in this study we compared the global transcriptional responses of wild-typ...

ORGANISM(S): Candida albicans

2007-07-05 | E-MEXP-1134 | biostudies-arrayexpress

Burkholderia cenocepacia-mediated inhibition of Staphylococcus aureus growth and biofilm formation

Staphylococcus aureus asymptomatically colonizes the nasal cavity and pharynx of up to 60% of the human population and, as an opportunistic pathogen, can breach its normal habitat, resulting in life-threatening infections. S. aureus infections are of additional concern for populations with impair...

2024-11-26 | MTBLS11049 | MetaboLights

Diminished OPA1 expression and impaired mitochondrial morphology and homeostasis are prominent features of Aprataxin-deficient cells

Ataxia with oculomotor apraxia type 1 (AOA1) is an early onset progressive spinocerebellar ataxia caused by mutation in aprataxin (APTX). Here we use RNA-seq to identify genes that are affected by APTX-KO, APTX overexpression, and APTX mutant, thus contributes to understadning the mechanisms underly...

ORGANISM(S): Homo sapiens

2018-12-28 | E-GEOD-124412 | biostudies-arrayexpress

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

Already a proven mechanism for drought sustainability, crassulacean acid metabolism (CAM) is a specialized type of photosynthesis that maximizes water-use efficiency (WUE) via an inverse (compared to C3 and C4 photosynthesis-performing species) day/night pattern of stomatal closure/opening to shift ...

2017-10-13 | MTBLS363 | MetaboLights

The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Crassulacean acid metabolism (CAM) is a water-use efficient adaptation of photosynthesis that has evolved independently many times in diverse lineages of flowering plants. We hypothesize that convergent evolution of protein sequence and temporal gene expression underpins the independent emergences o...

2018-01-09 | MTBLS519 | MetaboLights

Proteomic and secretomic response of an African Armillaria species to iron.

Armillaria species have attracted considerable research interest because they are widely distributed, mostly plant-pathogenic, and exhibit unique characteristics. Abiotic factors influence intra- and inter-species variations in pathogenicity and/or virulence of these fungi. However, the mechanisms i...

ORGANISM(S): Fungi Armillaria sp. CMW 4456 Basidiomycota

2026-03-02 | PXD068883 | Pride

Lactobacillus johnsonii NCC comparative genomics with L. iatae

Whole genome DNA microarray designed for the probiotic L. johnsonii strain NCC533 was used for comparative genomic hybridization (CGH) of L. johnsonii ATCC 33200T, L. johnsonii BL261, L. gasseri ATCC 33323T and L. iatae BL263 (CECT 7394T). In these experiments, the fluorescence ratio distributions o...

ORGANISM(S): Lactobacillus johnsonii

2010-11-24 | E-GEOD-21627 | biostudies-arrayexpress

Previous page
1 / 5
You're on page 1
page 2
page 3
page 4
page 5
Next page