Ming Ming M - OmicsDI

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Unknown (1686)
Transcriptomics (404)
Proteomics (210)
Genomics (105)
Metabolomics (44)
Models (2)
Multiomics (2)
Genomic (1)
Other (1)

Organisms

Homo sapiens (248)
Mus musculus (112)
Danio rerio (48)
Rattus norvegicus (29)
Arabidopsis thaliana (20)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (7)
Escherichia coli (7)
Thermus thermophilus HB8 (6)
Daphnia magna (4)
Schizosaccharomyces pombe (4)
Streptococcus pneumoniae (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Oryza sativa (4)
Gossypium hirsutum (3)
Pyrococcus furiosus (3)
Candida albicans (3)
Phalaenopsis aphrodite subsp. formosana (2)
Citrus reticulata (2)
Musca domestica (2)
Oryza sativa Indica Group (2)
Mycobacterium tuberculosis (2)
Salmo salar (2)
Oryza sativa Japonica Group (2)
Caenorhabditis elegans (2)
Oryctolagus cuniculus (1)
Cloeon dipterum (1)
Raphidocelis subcapitata (1)
Myriophyllum spicatum (1)
Lemna minor (1)

Organisms

Mus musculus (6)
Homo sapiens (3)

Repository

biostudies-arrayexpress (443)
pride (102)
iProX (83)
EGA (62)
MetaboLights (39)
MassIVE (15)
ENA (9)
GNPS (5)
PAXDB (5)
jPOST (4)
geo (2)
BioModels (1)
Cell Collective (1)
dbGaP (1)
GPMDB (1)

Tissue

Cell culture (18)
Plant cell (6)
Whole body (5)
Leaf (5)
Epithelial cell (5)
Permanent cell line cell (4)
Kidney (4)
Brain (3)
Blood plasma (3)
Liver (3)
Blood (3)
Embryonic fibroblast (2)
Seed (2)
Melanocyte (2)
Shoot (2)
Macrophage (2)
Blood serum (2)
Embryo (2)
Lung (2)
T cell (2)
CHO cell (1)
Regulation of gastric acid secretion (1)
Aerial part (1)
Vesicle budding from membrane (1)
Carotid atherosclerotic plaque (1)
Wound fluid (1)
Venom apparatus (1)
Endosperm (1)
Type I pneumocyte (1)
Epithelial cell of alveolus of lung (1)

Disease

Lymphoma (8)
Normal (6)
Disease free (5)
Melanoma (4)
Malignant neoplasm of ovary (4)
Pneumonia (2)
Diffuse gastric cancer (2)
Kidney cancer (2)
Acute leukemia (2)
Embryonal Carcinoma (1)
Mantle cell lymphoma (1)
B. dendrobatidis infection (1)
Squamous cell carcinoma (1)
Leukemia (1)
Not Available (1)
Amyloidosis (1)
Lipid metabolism disorder (1)
Arthritis (1)
Avian influenza (1)
Alopecia (1)
Lung cancer (1)
Chronic myeloid leukemia (1)
Cervix carcinoma (1)
Cardiovascular system disease (1)
Atherosclerosis (1)
Osteoporosis (1)
Type 2 diabetes mellitus (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (102)
Shotgun proteomics (39)
Mass spectrometry (33)
Bottom-up proteomics (28)
Gel-based experiment (13)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (9)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (4)
Proteogenomics (3)
Top-down proteomics (3)
Illumina HiSeq 2500 (2)
NMR spectroscopy (2)
RNA mass spectrometry (2)
Data-independent acquisition (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II (1)
MSE (1)
All-ion fragmentation (1)
SWATH MS (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (27)
Illumina HiSeq 4000 (27)
Illumina HiSeq 2000 (16)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (5)
Illumina HiSeq 2500 (5)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (4)
FastPrep‑24 homogenizer (MP Biomedicals) (3)
See manuscript (3)
GenePix Professional 4200A [Axon Instruments] (3)
Illumina MiSeq (3)
NextSeq 500 (3)
Scanning hardware (2)
Illumina HiSeq 1500 (2)
Q-Exactive HF (2)
Agilent SureScan Microarray Scanner G2600D (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
RapidPURE RNA Plant Kit (MP Biomedicals, Illkirch, France) (1)
FastPrep-24 homogeniser (1)
(Make:Affymetrix Scanner,Model:) (1)
ArrayWoRx Multi-Format Reader [Applied Precision] (1)
454 GS 20 (1)
Agilent Microarray Scanner (mod. G2505C) (1)
Illumina Genome Analyzer IIx (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq X (1)
Illumina NextSeq 2000 (1)
Illumina HiSeq 3000 (1)
Orbitrap Exploris 240 (1)
Xevo G2 Q-Tof (1)
MicrOTOF-Q II (1)

Publication Date

2013 (69)
2012 (46)
2022 (44)
2015 (44)
2026 (43)
2011 (42)
2025 (40)
2014 (40)
2016 (38)
2021 (34)
2024 (31)
2023 (31)
2010 (29)
2008 (21)
2020 (18)
2019 (18)
2017 (15)
2009 (15)
2006 (12)
2018 (10)
2007 (10)
2005 (7)
2004 (7)
2003 (1)

UNIPROT ID/AC

A0A3B6D6K8_WHEAT (2)
A0A3B6FL62_WHEAT (2)
4565.Traes_5BL_EB5679CA8.1 (2)
A0A3B6IS21_WHEAT (2)
A0A3B6IXJ1_WHEAT (2)
4565.Traes_6BL_722B84F24.1 (2)
A0A3B6LM83_WHEAT (2)
4565.Traes_3DS_A379914C4.1 (2)
A0A3B6KHB8_WHEAT (2)
4565.Traes_7DL_F8AF46FFE.1 (2)
A0A3B6LVZ1_WHEAT (2)
4565.Traes_3DL_116693163.1 (2)
4565.Traes_3AL_367B04E24.1 (2)
A0A3B6MZ77_WHEAT (2)
4565.Traes_3AL_3E2526937.3 (2)
A0A3B6MRT2_WHEAT (2)
4565.Traes_3B_031DCC341.2 (2)
4565.Traes_4BS_F02B98B35.1 (2)
4565.Traes_4DL_C633C9AA1.1 (2)
4565.Traes_2DL_C18BDC009.1 (2)
A0A3B6JMZ7_WHEAT (2)
A0A0A7LUF6_WHEAT (2)
A0A3B6TIS4_WHEAT (2)
A0A3B6BZU7_WHEAT (2)
4565.Traes_3B_53E723173.1 (2)
4565.Traes_3AL_1B3EA3526.1 (2)
4565.Traes_2AS_623A1D972.1 (2)
A0A3B6RNS1_WHEAT (2)
4565.Traes_4DL_E2026E81F.1 (2)
4565.Traes_3AS_CFFF0B2BC.1 (2)

CHEBI ID

CHEBI:16704 (10)
CHEBI:17368 (10)
CHEBI:30769 (10)
CHEBI:30915 (9)
CHEBI:16919 (9)
CHEBI:15756 (9)
CHEBI:18237 (8)
CHEBI:16750 (8)
CHEBI:15741 (8)
CHEBI:28044 (8)
CHEBI:15891 (8)
CHEBI:32816 (8)
CHEBI:17822 (7)
CHEBI:26271 (7)
CHEBI:25094 (7)
CHEBI:16040 (7)
CHEBI:18186 (7)
CHEBI:16811 (7)
CHEBI:17234 (7)
CHEBI:28300 (7)
CHEBI:18257 (7)
CHEBI:15428 (7)
CHEBI:6650 (7)
CHEBI:16335 (7)
CHEBI:17568 (7)
CHEBI:17509 (7)
CHEBI:18012 (7)
CHEBI:16027 (7)
CHEBI:16737 (7)
CHEBI:27897 (7)

Metabolite Name

Creatine (8)
Cytosine (7)
Leucine (6)
Taurine (6)
Dibutyl phthalate (6)
Adenosine (6)
Phenylalanine (6)
Glutamine (6)
Glycerophosphocholine (6)
Hippuric acid (6)
Hypoxanthine (6)
Histidine (5)
Guanosine (5)
Tyrosine (5)
Uracil (5)
Sphingosine (5)
Benzoic acid (5)
Oleamide (5)
Tyrosine (5)
Guanine (5)
Adenine (5)
Glutamic acid (5)
Cytidine (5)
Guanosine (5)
Uridine (5)
Creatinine (5)
L-saccharopine (4)
Tributyl phosphate (4)
2'-deoxycytidine (4)
Pentaethylene glycol (4)

IsPrivate

False (1)

First Public Date

2023 (5)
2014 (2)
2013 (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (214)
RNA-seq of coding RNA (95)
ChIP-seq (21)
RNA-seq of non coding RNA (17)
Comparative genomic hybridization by array (16)
Other (11)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (9)
Transcription profiling by SAGE (6)
Unknown experiment type (5)
Animal - High-throughput sequencing (5)
ChIP-chip by tiling array (4)
DNA-seq (4)
ChIP-chip by array (3)
Cell line - One-color microarray (2)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
Bisulfite-seq (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Exome sequencing (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (228)
2022 (206)
2023 (197)
2024 (189)
2021 (171)
2020 (140)
2016 (101)
2015 (97)
2013 (97)
2017 (93)
2018 (91)
2019 (88)
2014 (77)
2012 (73)
2011 (66)
2026 (63)
2010 (46)
2008 (24)
2009 (22)
2007 (17)
2006 (12)
2005 (11)
2004 (10)
2001 (3)
2003 (2)
2002 (2)
2000 (1)
1999 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
IBC R602,128, Academia Road Sec. 2, Nankang, Taipei 115, Taiwan (3)
1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Metabolomics-Proteomics Research Center, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan (3)
UPR 9002 CNRS-ARN Université De Strasbourg IBMC (2)
College of Life Science, Capital Normal University, Beijing 100048, China (2)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
Institute of Chemistry, Academia Sinica, Taiwan (2)
College of Life Science, Capital Normal University, 100048 Beijing, China (1)
Bioprocessing Technology Institute , Agency for Science, Technology and Research-A*STAR, 20 Biopolis Way 06-01, Singapore 138668, Republic of Singapore (1)
Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei, China. 2, Sino-African Joint Research Center, Chinese Academy of Sciences, Wuhan 430074, China (1)
NMPA Key Laboratory for Research and Evaluation of Drug Metabolism & Guangdong Provincial Key Laboratory of New Drug Screening & Guangdong-Hongkong-Macao Joint Laboratory for New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University,Guangzhou 510515, P.R.China (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
Université de Strasbourg, Architecture et Réactivité de l'ARN, Institut de biologie moléculaire et cellulaire du CNRS, 2 allée Konrad Roentgen, 67084 Strasbourg France (1)
school of life sciences (1)
Architecture et Réactivité de l’ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67084 Strasbourg, France (1)
Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Beijing, China (1)
Université de Strasbourg, CNRS, Architecture et Réactivité de l’ARN, 67084 Strasbourg, France (1)
College of Life Sciences, Capital Normal University No. 105 Xisanhuan North Road, Beijing 100048 P. R. China (1)
Sheng Yushou Center of Cell Biology and Immunology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (1)
The University of Hong Kong, Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry (1)
Lab of Stem cells adn noncoding RNAs, Institue of Molecular Medicine, Peking University (1)
Shanghai Jiao Tong University Ming Yu Lab (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
School of Life Sciences and Center for Soybean Research of the State Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Animal Reproduction Institute, Guangxi University, Nanning 530004, Guangxi, PR China. (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)

2459 Results

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