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ProteomicsQuantitative Mass Spectrometry Reveals Plasticity of Metabolic Networks in Mycobacterium smegmatis
Carbon metabolism in Mycobacterium smegmatis was analysed using reverse-phase chromatography coupled to orbitrap high-resolution mass spectrometer using trypsin digestion. MS/MS files were searched against the Mycobacterium smegmatis strain MC2-155 database Release 1 - July 2010 ) by MaxQuant softwa...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2014-07-09 | PXD000253 | Pride
Metabolic pathways Dimethyl Mycobacterium smegmatis Carbon-sources Maxquant Lc-ms/ms 
UnknownQuantitative mass spectrometry reveals plasticity of metabolic networks in Mycobacterium smegmatis.
Not available
S-EPMC4223488 | biostudies-literature
ProteomicsTelomeric protein composition deriving from q-TIP analysis comparing Hela supertelomerase cells, Hela TRF2 knockdown cells or Hela POT1 knockdown cells with Hela control cells, proteomes by 2D-LC-MS/MS
All samples derived from the q-TIP experiments were analysed using reverse-phase chromatography coupled to orbitrap high-resolution mass spectrometer using trypsin digestion. MS/MS files were searched against the UniProt human protein database (release date 18-04-2012) by MaxQuant software (version ...
ORGANISM(S): Homo sapiens (Human) 
2013-11-26 | PXD000243 | Pride
Human Silac Telomer length Telomers Chromatin Lc-ms/ms 
ProteomicsA mammalian transcription factor-specific peptide repository for targeted proteomics
Site-specific transcription factors (TFs) play an essential role in mammalian development and function as they are vital for the majority of cellular processes. Despite their biological importance, TF proteomic data is scarce in the literature, likely due to difficulties in detecting peptides as the...
ORGANISM(S): Mus musculus (Mouse) 
2015-01-23 | PXD001212 | Pride
Transcription factor Repository for targeted proteomics Proteotypic peptide selection Quantitative proteomics 
UnknownDifferential display of peptides induced during the immune response of Drosophila: a matrix-assisted laser desorption ionization time-of-flight mass spectrometry study.
Not available
S-EPMC21644 | biostudies-literature
ProteomicsFunctional proteomics defines differential signaling networks of the oncogenic kinases Bcr-Abl p210 and p185
The two major isoforms of the oncogenic Bcr-Abl tyrosine kinase, p210 and p185, are expressed upon the Philadelphia chromosome translocation. p210 is the hallmark of chronic myelogenous leukemia, whereas p185 occurs in the majority of B-cell acute lymphoblastic leukemia. Differences in protein-prote...
ORGANISM(S): Mus musculus (Mouse) 
2017-01-31 | PXD005149 | Pride
Leukemia Bcr-abl tyrosine kinase Interactome Silac Phosphoproteome 
UnknownMalaria Parasite-Infected Erythrocytes Secrete PfCK1, the Plasmodium Homologue of the Pleiotropic Protein Kinase Casein Kinase 1.
Not available
S-EPMC4668060 | biostudies-literature
UnknownDifferential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics.
Not available
S-EPMC5508078 | biostudies-literature
UnknownCyclodextrin triggers MCOLN1-dependent endo-lysosome secretion in Niemann-Pick type C cells.
Not available
S-EPMC6446697 | biostudies-literature
ProteomicsPeroxiredoxin 1 protects telomeres from oxidative damage preserving chromosome ends for extension by telomerase
With the increase of atmospheric oxygen 2.3 billion years ago, mechanisms evolved to mitigate the toxic effects of oxygen radicals. Telomeres appear particularly susceptible to oxidative damage, which leads to cellular and organismal aging, cancer, cardiac failure and other diseases. Specific mechan...
ORGANISM(S): Homo sapiens (Human) 
2016-12-07 | PXD002626 | Pride
Peroxiredoxin 1  telomeres  oxidative damage  telomerase 
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