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TranscriptomicsGenome-wide assessment of imprinted expression in human cells
Parent-of-origin dependent expression of alleles, imprinting, has been suggested to impact a substantial proportion of mammalian genes. Its discovery requires allele-specific detection of expressed transcripts, but in some cases detected allelic expression (AE) bias has been interpreted as imprinti...
ORGANISM(S): Homo sapiens 
2011-01-21 | E-GEOD-26286 | biostudies-arrayexpress
TranscriptomicsProspective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (Mapping250K_Nsp and Mapping250K_Sty)
Clinical laboratories are adopting array comparative genomic hybridization (AGH) as a standard clinical test. A number of whole genome AGH systems are available, but little is known about the comparative performance in a clinical context. We prospectively studied 30 children with idiopathic MR and ...
ORGANISM(S): Homo sapiens 
2011-02-17 | E-GEOD-27216 | biostudies-arrayexpress
Genomicsena-DATASET-BTRC-26-04-2017-20:29:35:774-41 - samples
Diffuse Intrinsic Pontine Glioma (DIPG) is a fatal brain cancer that arises in the brainstem of children with no effective treatment. To understand what drives DIPGs we integrated whole-genome-sequencing with methylation, expression and copy-number profiling.
EGAD00001003305 | EGA
GenomicsBTRC Data Access Committee
Data Access Committee EGAC00001000149
EGAC00001000149 | EGA
Genomicsena-DATASET-BTRC-03-04-2014-18:00:02:250-43 - samples
Whole genome alignments of DIPG patients
EGAD00001000814 | EGA
GenomicsWhole genome sequencing and whole exome sequencing of DIPG tumors and matched normal tissue
Diffuse Intrinsic Pontine Glioma (DIPG) is a fatal brain cancer that arises in the brainstem of children with no effective treatment. To understand what drives DIPGs we integrated whole-genome-sequencing with methylation, expression and copy-number profiling.
EGAS00001000575 | EGA
TranscriptomicsProspective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (Agilent 244K)
Clinical laboratories are adopting array comparative genomic hybridization (AGH) as a standard clinical test. A number of whole genome AGH systems are available, but little is known about the comparative performance in a clinical context. We prospectively studied 30 children with idiopathic MR and ...
ORGANISM(S): Homo sapiens 
2011-02-17 | E-GEOD-27229 | biostudies-arrayexpress
TranscriptomicsProspective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (GenomeWideSNP_6)
Clinical laboratories are adopting array comparative genomic hybridization (AGH) as a standard clinical test. A number of whole genome AGH systems are available, but little is known about the comparative performance in a clinical context. We prospectively studied 30 children with idiopathic MR and ...
ORGANISM(S): Homo sapiens 
2011-02-17 | E-GEOD-27145 | biostudies-arrayexpress
TranscriptomicsProspective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (NimbleGen)
Clinical laboratories are adopting array comparative genomic hybridization (AGH) as a standard clinical test. A number of whole genome AGH systems are available, but little is known about the comparative performance in a clinical context. We prospectively studied 30 children with idiopathic MR and ...
ORGANISM(S): Homo sapiens 
2011-02-17 | E-GEOD-27251 | biostudies-arrayexpress
TranscriptomicsAffymetrix SNP 6.0 array data for Diffuse Intrinsic Pontine Glioma
Diffuse Intrinsic Pontine Glioma (DIPG) is a fatal brain cancer that arises in the brainstem of children with no effective treatment and near 100% fatality. The failure of most therapies can be attributed to the delicate location of these tumors and choosing therapies based on assumptions that DIPGs...
ORGANISM(S): Homo sapiens 
2014-03-31 | E-GEOD-50024 | biostudies-arrayexpress
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