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TranscriptomicsMouse Exons
Exon tiling array encompassing 837,251 probes across the mouse genome. 12 tissue pools. Composition of the 12 mRNA pools analyzed (mRNA per array hybridization): 1- Heart (2 microgram), Skeletal muscle (2 microgram) 2- Liver (2 microgram) 3- Whole brain (1.5 microgram), Cerebellum (0.48 micr...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-3047 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of alternative splicing in Caenorhabditis elegans
Alternative splicing (AS) plays a crucial role in the diversification of gene function and regulation. Consequently, the systematic identification and characterization of temporally regulated splice variants is of critical importance to understanding animal development. We have used high-throughput ...
ORGANISM(S): Caenorhabditis elegans 
2010-12-14 | E-GEOD-25927 | biostudies-arrayexpress
TranscriptomicsRNAcompete: a method for rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
Metazoan genomes encode hundreds of RNA binding proteins (RBPs) but relatively few have well-defined RNA-binding preferences. Current techniques for determining RNA targets, including those involving in vitro selection and RNA co-immunoprecipitation, require significant time and labour investment. H...
ORGANISM(S): synthetic construct 
2010-05-18 | E-GEOD-15769 | biostudies-arrayexpress
TranscriptomicsRIP-Chip of endogenous Staufen and GFP-tagged Staufen from 0-3 hour Drosophila embryos
Staufen-associated mRNAs were identified in early Drosophila embryos by RNA-co-immunoprecipitation followed by microarray analysis (RIP-Chip), using two complementary approaches: RIP-Chip from wild-type embryos using a synthetic anti-Staufen antibody, and RIP-Chip from transgenic GFP-Staufen-express...
ORGANISM(S): Drosophila melanogaster 
2013-09-05 | E-GEOD-43418 | biostudies-arrayexpress
ProteomicsYoun_et_al_RNAbodies_SAINT3105_Set3
This set of submissions contains the mass spectrometry files for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA bodies. BioID experiments were performed from Flp-In T-REx HEK293 cells and MS files were acquired on Orbitrap Elite and Orbitrap Velos. D...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-04 | MSV000081413 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3115
Youn et al. High-density proximity mapping reveals the subcellular organization of mRNA-associated granules and bodies . Files related to SAINT 3115.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-06 | MSV000081415 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3090
Youn et al., High-density proximity mapping reveals the subcellular organization of mRNA-associated granules and bodies. Dataset related to APMS, SAINTexpress ID 3090.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-06 | MSV000081414 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3105_Set2
This set of submissions contains the mass spectrometry files for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA bodies. BioID experiments were performed from Flp-In T-REx HEK293 cells and MS files were acquired on Orbitrap Elite and Orbitrap Velos. T...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-04 | MSV000081412 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3108
Youn et al. High-density proximity mapping reveals the subcellular organization of mRNA-associated granules and bodies (SAINTexpress 3108)
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-07 | MSV000081419 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3112_MSPLIT_DDA (PAIRED with MSV000081426)
This set of submissions contains the mass spectrometry files acquired using Data-Dependent Acquisition mode (DDA), which were paired with Data-Independent Acquisition mode (DIA) files (MSV000081426) for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA b...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-01-17 | MSV000081945 | MassIVE
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