Mukherjee A A - OmicsDI

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Unknown (4436)
Transcriptomics (99)
Proteomics (92)
Genomics (21)
Metabolomics (9)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (116)
Mus musculus (26)
Escherichia coli (8)
Drosophila melanogaster (7)
Arabidopsis thaliana (4)
Strongylocentrotus purpuratus (3)
Labeo rohita (3)
Bos taurus (2)
Echis carinatus (2)
Methanocaldococcus jannaschii (2)
Toxoplasma gondii GT1 (2)
Leishmania donovani (1)
Leishmania major (1)
synthetic construct (1)
Oryza sativa (1)
Streptococcus pneumoniae (1)
Solanum lycopersicum (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Caenorhabditis elegans (1)
Daboia russelii (1)
Desmodesmus subspicatus (1)
Legionella pneumophila subsp. pneumophila Lp02 (1)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
Naja naja (1)
Plasmodium falciparum 3D7 (1)
Thermochaetoides thermophila (1)
Toxoplasma gondii (1)
Toxoplasma gondii RH (1)

Organisms

Mangifera indica (4)
Citrus x aurantiifolia (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (103)
pride (79)
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Tissue

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Disease

Brain cancer (4)
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Alzheimer's disease 18 (1)
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Cardiovascular system disease (1)
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Polycystic ovary syndrome (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (38)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (12)
Gel-based experiment (11)
Data-dependent acquisition (10)
Mass spectrometry (8)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (7)
Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
454 GS FLX+ (2)
Illumina HiSeq 4000 (2)
Chromium Single Cell 3’ Reagent kits v2 (1)
Illumina Genome Analyzer IIx (1)
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Q Exactive Plus (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - - hilic (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - hilic (1)
Xevo TQ MS (Waters) (1)

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2022 (21)
2011 (20)
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2015 (17)
2013 (17)
2012 (14)
2021 (13)
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2020 (11)
2017 (8)
2014 (7)
2008 (7)
2010 (6)
2023 (5)
2016 (5)
2026 (5)
2019 (4)
2009 (3)
2007 (3)
2018 (3)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:27266 (6)
CHEBI:28044 (6)
CHEBI:15891 (5)
CHEBI:16708 (5)
CHEBI:16737 (5)
CHEBI:16919 (5)
CHEBI:18186 (5)
CHEBI:18211 (5)
CHEBI:18237 (5)
CHEBI:24898 (5)
CHEBI:25094 (5)
CHEBI:27897 (5)
CHEBI:28300 (5)
CHEBI:29016 (5)
CHEBI:15428 (4)
CHEBI:15676 (4)
CHEBI:16027 (4)
CHEBI:16449 (4)
CHEBI:16566 (4)
CHEBI:16811 (4)
CHEBI:17126 (4)
CHEBI:17154 (4)
CHEBI:17306 (4)
CHEBI:17368 (4)
CHEBI:17755 (4)
CHEBI:17822 (4)
CHEBI:18012 (4)
CHEBI:18257 (4)
CHEBI:22653 (4)
CHEBI:22660 (4)

Metabolite Name

Adenine (4)
Cystathionine (4)
AMP (3)
Alanine (3)
Allantoin (3)
Arginine (3)
Asparagine (3)
Citrulline (3)
Creatine (3)
Creatinine (3)
Fumarate (3)
Glutamine (3)
Glycine (3)
Histidine (3)
Hypoxanthine (3)
Indolelactate (3)
Isoleucine (3)
Leucine (3)
Lysine (3)
Methionine (3)
Ornithine (3)
Phenylalanine (3)
Phenylpyruvate (3)
Proline (3)
Pseudouridine (3)
Serine (3)
Spermidine (3)
Sphinganine (3)
UMP (3)
Valine (3)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

First Public Date

2020 (3)
2026 (2)
2025 (2)
2023 (1)
2018 (1)
2017 (1)
2013 (1)

Modelling Approach

Machine learning (1)

Study type

Transcription profiling by array (56)
RNA-seq of coding RNA (20)
RNA-seq of non coding RNA (7)
Comparative genomic hybridization by array (5)
Unknown experiment type (3)
Other (3)
ChIP-seq (2)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Antigen profiling (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (522)
2022 (479)
2023 (470)
2021 (428)
2024 (390)
2020 (338)
2019 (288)
2018 (251)
2017 (223)
2016 (199)
2014 (175)
2015 (162)
2013 (142)
2011 (100)
2012 (96)
2026 (62)
2010 (60)
2009 (48)
2008 (46)
2007 (20)
2006 (18)
2005 (5)
2003 (4)
2001 (4)
1999 (3)
2004 (2)
2000 (2)
2002 (1)
1998 (1)

Lab affiliation

Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (4)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
University of Bordeaux, INSERM, MRGM, U1211, F-33000 Bordeaux, France. ImmunoConcEpT, CNRS UMR 5164, INSERM ERL 1303, University of Bordeaux, Bordeaux, France. (3)
Spectrométrie de Masse Biologique et Protéomique SMBP, ESPCI Paris, PSL University, LPC CNRS UMR 8249, 10 rue Vauquelin F-75005 Paris, France (2)
Alitea Biotechnology GmbH (1)
Assistant Professor, Department of Biochemistry, University of Calcutta, Kolkata, India (1)
Associate Professor, Institute of Advanced Study in Science and Technology (IASST), Guwahati-110035, Assam, India (1)
Biology Department University of Massachusetts Boston Boston, USA (1)
Biomolecular Mass Spectrometry and Proteomics Utrecht Institute for Pharmaceutical Sciences (UIPS) (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Cancer Biology Lab, Dept. of Biological Sciences, BITS Pilani (1)
Department of Anaesthesia and Intensive Care, Post Graduate Institute of Medical Education and Research, Chandigarh 160012, India. (1)
Department of Biosciences and bioengineering, IIT Bombay, India, 400076 (1)
Department of Chemical and Biological Engineering University of Sheffield Mappin Street, Sheffield S1 3JD United Kingdom (1)
Department of Endocrinology PGIMER, Chandigarh India Dr. Akhilesh Pandey Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, MN (1)
Department of Functional Genomics and Cancer, IGBMC, Illkirch, France (1)
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India (1)
Department of Molecular Biology, Cell Biology, and Biochemistry/Center of Genomics and Proteomics, Brown University, Providence, Rhode Island 02903, USA (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Molecular Endocrinology, National Institute for Research in Reproductive Health, Indian Council of Medical Research, Mumbai 400012, India (1)
Department of Neurology, Washington University School of Medicine St Louis (1)
Department of biosciences and Bioengineering, IIT Bombay (1)
Director of Bioinformatics and Proteomics, Meharry Medical College; Adjunct Associate Professor, Department of Biomedical Informatics, Vanderbilt University Medical Center (1)
Director, CSIR-INDIAN INSTITUTE OF CHEMICAL BIOLOGY, KOLKATA,INDIA (1)
Director, Institute of Advanced Study in Science and Technology (IASST), Vigyan Path, Paschim Boragaon, Guwahati 781035, Assam, India (1)
Director, Institute of Advanced Study in Science and Technology (IASST), Vigyan Path, Paschim Boragaon, Guwahati 781035, Assam, India (lab head) (1)
Dpt. of Microbiology and molecular medicine, Universtity of Geneva, Geneva, Switzerland (1)
Florey Institute (1)
Goethe university, Institute of Biochemistry II (1)
Head Proteomics Group , Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)

Tags

xref:PubMed:23824690 (1)
xref:PubMed:37953901 (1)
xref:PubMed:41094757 (1)
xref:EuropePMC:PMC12860561 (1)

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A cytochrome P450 CYP87A4 imparts sterol side-chain cleavage in digoxin biosynthesis

Digoxin extracted from the foxglove plant is a widely prescribed natural product for treating heart failure. It is listed as an essential medicine by the World Health Organization. However, how the foxglove plant synthesizes digoxin is mostly unknown, especially the cytochrome P450 sterol side chain...

2025-07-03 | MTBLS7993 | MetaboLights

Impact of acute lymphoblastic leukemia induction therapy: findings from metabolomics on non-fasted plasma samples from a biorepository

INTRODUCTION: Acute lymphoblastic leukemia (ALL) is among the most common cancers in children. With improvements in combination chemotherapy regimens, the overall survival has increased to over 90%. However, the current challenge is to mitigate adverse events resulting from the c...

2021-08-12 | MTBLS2394 | MetaboLights

Success stories: exploring perceptions of former fellows of a global faculty development program for health professions educators.

Not available

S-EPMC11443623 | biostudies-literature

Discovery of a Kojibiose Phosphorylase in Escherichia coli K-12.

Not available

S-EPMC5953851 | biostudies-literature

Modeling of Mesoscale Variability in Biofilm Shear Behavior.

Not available

S-EPMC5091762 | biostudies-literature

Multi-parametric functional imaging of cell cultures and tissues with a CMOS microelectrode array.

Not available

S-EPMC8963257 | biostudies-literature

A master cistromic circuit governing hepatic fibrogenesis [ChIP-seq]

Liver fibrosis is a reversible wound-healing response to liver injury and hepatic stellate cells (HSCs) are central cellular players that mediate hepatic fibrogenesis. However, the molecular mechanisms that govern this process remain unclear. Here, we reveal a novel cistromic circuit in HSCs compris...

ORGANISM(S): Homo sapiens

2013-04-29 | E-GEOD-38103 | biostudies-arrayexpress

Unraveling the Reaction Mechanism of Russell's Viper Venom Factor X Activator: A Paradigm for the Reactivity of Zinc Metalloproteinases?

Not available

S-EPMC10336966 | biostudies-literature

A Master Cistromic Circuit Governing Hepatic Fibrogenesis

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Rattus norvegicus

2013-04-29 | E-GEOD-41580 | biostudies-arrayexpress

Insight into ferromagnetic interactions in Cu^II-Ln^III dimers with a compartmental ligand.

Not available

S-EPMC10845014 | biostudies-literature