Mulberry - OmicsDI

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Unknown (693)
Genomics (402)
Transcriptomics (80)
Proteomics (18)
Metabolomics (9)
Models (3)
Multiomics (1)

Organisms

Bombyx mori (26)
Mus musculus (23)
Homo sapiens (19)
Bombyx mori (12)
Onchocerca volvulus (12)
Klebsiella pneumoniae (12)
Musca domestica (12)
Brugia malayi (12)
Schizosaccharomyces pombe (12)
Cnidaria (12)
Streptomyces coelicolor A3(2) (12)
Sus scrofa (12)
Human immunodeficiency virus 1 (12)
Oryza sativa Indica Group (12)
Sinorhizobium meliloti BL225C (12)
Vitis (12)
Sus scrofa domesticus (12)
Ostreococcus tauri (12)
Saccharomyces cerevisiae (12)
Rattus norvegicus (6)
Morus alba var. atropurpurea (4)
Morus alba (4)
Saccharomyces cerevisiae (2)
Drosophila melanogaster (2)
Bombyx mandarina (2)
Macaca mulatta (1)
Chlorocebus sabaeus (1)
Morus notabilis (1)
Helicoverpa armigera (1)
Rattus rattus (1)

Organisms

Morus alba (34)
soil metagenome (10)
Bombyx mori (8)
Morus alba var. atropurpurea (6)
Weissella paramesenteroides (6)
Morus notabilis (6)
Rattus norvegicus (5)
Ralstonia pseudosolanacearum (4)
Mulberry dwarf phytoplasma (3)
Broussonetia papyrifera (3)
Pestalotiopsis arceuthobii (3)
plant metagenome (3)
food fermentation metagenome (3)
Mus musculus (3)
Fructobacillus papyriferae (2)
Lepidoptera (2)
Morus alba var. multicaulis (2)
Scleromitrula shiraiana (2)
Glyphodes pyloalis (2)
Enterobacter mori (2)
Klebsiella variicola (2)
fermentation metagenome (2)
silage metagenome (2)
Limosilactobacillus fermentum (2)
Bacillus velezensis (2)
unidentified (2)
Homo sapiens (2)
Enterobacter mori LMG 25706 (1)
Fusarium sp. GX-001 (1)
Xylella fastidiosa MUL0034 (1)

Repository

ENA (394)
biostudies-arrayexpress (61)
geo (23)
pride (12)
MetaboLights (9)
BioModels (3)
EGA (3)
iProX (3)
MassIVE (3)
EVA (1)

Tissue

Plant cell (3)
Leaf (3)
Blastopore (1)
Fungal asexual spore (1)
Midgut (1)
Seed (1)
Cell suspension culture (1)
Epithelial cell (1)
Saliva (1)

Disease

Disease free (2)
Septicemia (1)

Technology Type

Mass Spectrometry (12)
Shotgun proteomics (8)
Mass spectrometry (5)
Mass spectrometry assay (4)
Bottom-up proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
SWATH MS (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
NextSeq 500 (2)
Illumina HiSeq 2000 (2)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)
Library preparation kit (1)
RNA isolation laboratory (1)
BSL-3 laboratory (1)
Desktop (1)
NextSeq 1000 (1)
Ion Torrent PGM (1)
Illumina HiSeq 2500 (1)
Bruker micrOTOF-Q III (1)
Agilent 7890B/5977B GC MS system (1)
LTQ (1)
TripleTOF 5600 (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)

Publication Date

2016 (17)
2014 (11)
2026 (11)
2021 (9)
2010 (8)
2025 (7)
2022 (6)
2017 (6)
2002 (6)
2024 (6)
2020 (5)
2019 (5)
2015 (5)
2013 (5)
2012 (2)
2009 (2)
2008 (1)
2011 (1)
2023 (1)
2018 (1)

CHEBI ID

CHEBI:142907 (1)
CHEBI:142912 (1)
CHEBI:142906 (1)
CHEBI:142908 (1)
CHEBI:142905 (1)
CHEBI:75589 (1)
CHEBI:9047 (1)
CHEBI:142904 (1)
CHEBI:142913 (1)
CHEBI:40721 (1)
CHEBI:58227 (1)
CHEBI:57702 (1)
CHEBI:20891 (1)
CHEBI:69814 (1)
CHEBI:31227 (1)
CHEBI:18330 (1)
CHEBI:16954 (1)
CHEBI:15765 (1)
CHEBI:17345 (1)

Metabolite Name

Sambutoxin (2)
Saccharopine (2)
4-Hydroxybenzaldehyde (2)
Adenosine (2)
Adenine (2)
6-{[2-(2,4-dihydroxyphenyl)-3-(3,7-dimethylocta-2,6-dien-1-yl)-5-hydroxy-6-(4-hydroxy-3-methylbut-2-en-1-yl)-4-oxo-4H-chromen-7-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
2-amino-4-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-2-({5,9-dihydroxy-8,8-dimethyl-2-oxo-4-phenyl-2H,8H,9H,10H-pyrano[2,3-h]chromen-10-yl}sulfanyl)ethyl}-C-hydroxycarbonimidoyl)butanoic acid (1)
3-phenyl-1-(2,3,4,6-tetrahydroxyphenyl)prop-2-en-1-one (1)
13-(acetyloxy)-5-hydroxy-9-oxo-8,17-dioxatetracyclo[8.7.0.0,.0,]heptadeca-1(10),2(7),3,5,11,13,15-heptaen-14-yl 2-hydroxyacetate (1)
Nicotinate beta-D-ribonucleotide (1)
Cis-4-Decenoic acid (1)
3,4,5-trihydroxy-6-{[8-(2-hydroxypropan-2-yl)-4-(1-hydroxypropyl)-2-oxo-2H,8H,9H-furo[2,3-h]chromen-5-yl]oxy}oxane-2-carboxylic acid (1)
Cyclic 3-Hydroxymelatonin (1)
4-hydroxy-2H,8H-[1,3]dioxolo[4,5-h]chromen-8-one (1)
4-ACETOXYPHENOL (1)
Alpha-Acetolactate decarboxylase (enzyme preparation from bacillus subtilis recombinant) (1)
3,4,5-trihydroxy-6-[1-(3-phenyloxiran-2-yl)ethoxy]oxane-2-carboxylic acid (1)
3,4,5-trihydroxy-6-{[3-(4-hydroxy-3-methoxyphenyl)-2-oxopropanoyl]oxy}oxane-2-carboxylic acid (1)
[3-(3-{[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-5,7-dihydroxy-4-oxo-3,4-dihydro-2H-1-benzopyran-2-yl)phenyl]oxidanesulfonic acid (1)
[(6-{[5,7-dihydroxy-2-(4-oxocyclohexa-2,5-dien-1-ylidene)-2H-chromen-3-yl]oxy}-3,4-dihydroxy-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl)methyl][1-hydroxy-3-(4-hydroxyphenyl)prop-2-en-1-ylidene]oxidanium (1)
9,10-dihydroxy-8,8-dimethyl-2H,8H,9H,10H-pyrano[2,3-h]chromen-2-one (1)
3,4,5-trihydroxy-6-({3-[(7-methoxy-2-oxo-2H-chromen-8-yl)methyl]-2-methyloxiran-2-yl}methoxy)oxane-2-carboxylic acid (1)
Dimoracin (1)
6-{4-[3-(3,5-dihydroxyphenyl)oxiran-2-yl]phenoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
2-amino-4-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-2-{[2-hydroxy-3-(4-methoxyphenyl)-3-oxo-1-phenylpropyl]sulfanyl}ethyl}-C-hydroxycarbonimidoyl)butanoic acid (1)
3-{[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-5,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one (1)
(4-methyl-2-oxochromen-7-yl) acetate (1)
FRAXETIN (1)
[2-hydroxy-5-(2-hydroxy-3-methoxy-3-oxopropyl)phenyl]oxidanesulfonic acid (1)
2',3',4'-Trihydroxyacetophenone (1)

IsPrivate

False (3)

First Public Date

2025 (64)
2024 (60)
2026 (55)
2022 (54)
2023 (52)
2021 (32)
2019 (21)
2020 (20)
2018 (11)
2017 (7)
2014 (7)
2013 (6)
2015 (3)
2016 (2)

Classification

bacteria (6)
fungi (2)

Modelling Approach

Cellular potts model (3)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (17)
Unknown experiment type (8)
ChIP-chip by tiling array (2)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Other (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (106)
2025 (94)
2023 (90)
2024 (89)
2021 (73)
2020 (68)
2016 (40)
2019 (34)
2014 (34)
2017 (26)
2018 (25)
2015 (22)
2010 (13)
2026 (11)
2013 (8)
2002 (6)
2012 (4)
2009 (4)
2008 (2)
2011 (2)
2007 (1)
2006 (1)
1998 (1)

Lab affiliation

Department of Biochemistry and Molecular Biology and Agricultural Chemistry and Soil science University of Alicante SPAIN (1)
University of Eastern Piedmont Department of Sciences and Technological Innovation, University of Piemonte Orientale, Italy ( lab head ) (1)
College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China (1)
Guangxi Botanical Garden of Medicinal Plant, Nanning, China (1)
Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing (1)
Institute of Molecular Biology gGmbH (IMB) (1)
Qingdao Agricultural University (1)
College of Biomedical Engineering & Instrument Science,Zhejiang University (1)
China-UK-NYNU-RRES Joint Laboratory of Insect Biology, Nanyang Normal University (NYNU), Nanyang 473061, Henan, People’s Republic of China (1)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (1)
State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, PRC (1)
Peking University (1)

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Mulberry Cultivation for Saline-Alkali Land Amelioration: Metagenomic and Metabolomic Perspectives on Soil Biogeochemistry and Leaf Metabolic Profiling

We conducted field trials combined with metabolomic sequencing to evaluate the saline-alkali soil remediation efficiency of mulberry trees, as well as the metabolic responses of mulberry leaves under saline-alkali stress.

2026-08-06 | MTBLS15262 | MetaboLights

Transcriptomics and metabolomics analysis reveal the anti-oxidation and immune boosting effects of mulberry leaves in growing mutton sheep

INTRODUCTION: Currently, the anti-oxidation of active ingredients in mulberry leaves (MLs) and their forage utilization is receiving increasing attention. Here, we propose that MLs supplementation improves oxidative resistance and immunity.

METHODS: We con...

2023-02-23 | MTBLS6516 | MetaboLights

Study on Wax Secretion and Wax-secreting System of Mulberry Pest Paurocephala sauteri Enderlein (Hemiptera: Psyllidae).

Paurocephala sauteri Enderlein, one of the most important pests of mulberry trees in the tropical and subtropical regions, the nymphs and adults of this species penetrate the veins on the back of leaves and buds of mulberry trees, nymph and female adult can secrete wax, these wax accumulated on the ...

2024-11-04 | MTBLS11229 | MetaboLights

Phosphoproteomic Analysis of Paper Mulberry under Chilling

Paper mulberry as a valuable woody species has a well chilling tolerance. In this study, phosphoproteomic analysis in combination with physiological measurement and mRNA quantification were employed to explore the molecular mechanism of chilling (4 °C) tolerance in paper mulberry. After chilling for...

ORGANISM(S): Broussonetia papyrifera

2018-04-20 | PXD005516 | Pride

mulberry lysate treated with oxyresveratrol

Identification of the biosynthetic enzyme of moracin M in mulberry through substrate based thermal proteome profiling

ORGANISM(S): Morus alba var. macroura Morus alba

2026-04-30 | PXD058978 | Pride

Moracin m Thermal proteome profiling Oxyresveratrol Mulberry

Effects of Morus alba L. (Mulberry) Leaf Extract in Hypercholesterolemic Mice on Suppression of Cholesterol Synthesis

To investigate effects of intake of mulberry leaf extracts on hypercholesterolemia, we performed gene expression profiling on rat liver by microarray analysis. Microarray analysis revealed that mulberry leaf extracts up-regulated the gene expression involved in suppression of cholesterol synthesis a...

ORGANISM(S): Mus musculus

2016-07-03 | E-GEOD-65839 | biostudies-arrayexpress

Mulberry dwarf phytoplasma strain:MDAK-01

Mulberry dwarf phytoplasma strain:MDAK-01 Genome sequencing

PRJNA1440177 | ENA

iTRAQ-based quantitative proteomic analysis reveals proteomic changes in leaves of mulberry in response to drought stress

Mulberry (Morus alba) is a fast-growing perennial woody plant with a long cultivation history in China and a distribution throughout the country. To date, the molecular mechanism of mulberry response to abiotic stress is little known. In the present study, proteomics data were collected from the lea...

ORGANISM(S): Morus alba

2022-10-13 | PXD010227 | Pride

Drought stress proteome itraq

Mulberry microorganism

Mulberry microorganism Raw sequence reads

PRJNA549049 | ENA

mulberry field soil

mulberry field soil Raw sequence reads

PRJNA1265401 | ENA

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