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ProteomicsProteogenomic analysis of Mycobacterium smegmatis using high resolution mass spectrometry
Biochemical evidence is vital for accurate genome annotation. The integration of experimental data collected at the proteome level using high resolution mass spectrometry allows for improvements in genome annotation by providing evidence for novel gene models, while validating or modifying others. ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2016-03-31 | PXD003500 | Pride
Mass spectrometry Genome annotation Mycobacterium smegmatis Proteogenomics Proteomics 
ProteomicsMetaNovo : an open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets
Results We compared MetaNovo to published results from the MetaPro-IQ pipeline on 8 human mucosal-luminal interface samples, with comparable numbers of peptide and protein identifications, many shared peptide sequences and a similar bacterial taxonomic distribution compared to that found using a ma...
ORGANISM(S): human gut metagenome 
2023-05-16 | PXD030708 | Pride
Metaproteomics De novo sequencing Probabilistic 
UnknownNationwide Screening Unveils Endemic Ophidiomyces ophidiicola Presence in Northern Italy, Mainly Affecting Dice Snakes: Evidence from Contemporary and Historical Snake Samples.
Not available
S-EPMC11856666 | biostudies-literature
ProteomicsMsmegmatis strMC2 155 - Whole organism, iBAQ (Potgieteretal,frontmicrobiol2016)
abundance based on iBAQ, Interaction consistency score: 11.4, Coverage: 45
ORGANISM(S): 246196 
2016-00-00 | 1196164352 | PAXDB
ProteomicsMsmegmatis strMC2 155 - Whole organism, iBAQ (Potgieteretal,frontmicrobiol2016)
abundance based on iBAQ, Interaction consistency score: 12.3, Coverage: 45
ORGANISM(S): 246196 
2016-00-00 | 2359555123 | PAXDB
Genomicsb3103354-894c-4013-9d5d-862135fcebe9 - samples
This dataset contains whole genome sequencing data on 25 individuals with myasthenia gravis. The data was generated using Illumina sequencing technology and is presented as BAM files for each sample.
EGAD00001005262 | EGA
GenomicsWhole genome sequencing of 25 South African individuals with myasthenia gravis
This study investigated the genetic basis of an ophthalmoplegic subphenotype of MG (OP-MG) which occurs in a proportion of myasthenics with juvenile symptom onset and African genetic ancestry. This OP-MG subphenotype is characterised by treatment resistant weakness of the extraocular muscles (EOMs) ...
EGAS00001003462 | EGA
GenomicsUCT Neurology Research Group Data Access Committee
Data Access Committee EGAC00001001206
EGAC00001001206 | EGA
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