Multi-enzyme - OmicsDI

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Unknown (2527)
Transcriptomics (1100)
Genomics (359)
Proteomics (319)
Metabolomics (79)
Other (12)
Models (5)
Methylation profiling (2)

Organisms

Mus musculus (489)
Homo sapiens (280)
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Drosophila melanogaster (22)
Arabidopsis thaliana (17)
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Caenorhabditis elegans (13)
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Escherichia coli (8)
Macaca mulatta (7)
Xenopus laevis (5)
Bacillus subtilis subsp. subtilis str. 168 (5)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (5)
Bacillus subtilis (5)
Neurospora crassa (4)
Salmo salar (4)
Oncorhynchus mykiss (4)
Aplysia californica (3)
Oryza sativa (3)
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Heliothis virescens (2)
Pimephales promelas (2)

Organisms

Homo sapiens (64)
Mus musculus (52)
Saccharomyces cerevisiae (3)
Clavibacter zhangzhiyongii (2)
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goat gut metagenome (2)
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Pseudoalteromonas sp. J010 (1)
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Caudoviricetes sp. DSU-SDHN-KPN4 (1)
Bacillus cereus AH259 (1)
Bacillus cereus AH812 (1)
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Bacillus cereus AH535 (1)
Bacillus cereus AH819 (1)
Ruminococcus flavefaciens FD-1 (1)
Leishmania braziliensis (1)
Staphylococcus epidermidis RP62A (1)
Acetivibrio thermocellus (1)
Amaranthaceae (1)
Haloferax volcanii DS2 (1)
Escherichia coli BL21(DE3) (1)
Limnoperna fortunei (1)

Repository

biostudies-arrayexpress (1090)
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pride (237)
geo (117)
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Tissue

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Infected (1)
Oligodendroglioma (1)
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Dukes D primary colon cancer (1)
Represent tolerant CD4+ T cells that have not been activated (1)
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Acute monoblastic leukaemia (1)
None- acute control (1)
Non-infected (1)
IBDV infected (1)
SS2-infected (1)

Technology Type

Mass Spectrometry (237)
Shotgun proteomics (145)
Bottom-up proteomics (50)
Mass spectrometry (46)
Mass spectrometry assay (32)
Data-dependent acquisition (26)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-independent acquisition (11)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
SWATH MS (8)
Top-down proteomics (8)
SRM/MRM (7)
HDMSE (4)
Affinity proteomics (3)
All-ion fragmentation (3)
Gel-based experiment (3)
MSE (2)
ILLUMINA, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)

Instrument Platform

Illumina NovaSeq 6000 (29)
Illumina HiSeq 2500 (22)
NextSeq 500 (17)
Illumina HiSeq 2000 (16)
Axon GenePix 4000B scanning hardware (8)
Illumina HiSeq 4000 (8)
Illumina MiSeq (6)
Illumina Genome Analyzer II (4)
Illumina NovaSeq X (4)
NextSeq 2000 (4)
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Scanning hardware (3)
Tru-cut biopsy needle (Marquee®, 16 G × 10 cm) (2)
. (2)
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ScanArray 6000 [Perkin Elmer] (2)
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Illumina HiSeq 3000 (2)
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TruSeq Stranded Total RNA Library Prep Gold Kit, TruSeq Stranded Total RNA Globin Kit (1)
Nanodrop 2000c spectrophotometer (1)
GeneChip Scanner 2500 (1)
Cyclone (1)
Agilent G2565AB microarray scanner (1)
Agilent Surescan High Resolution DNA microarray Scanner (1)
HP desktop (1)

Publication Date

2014 (143)
2010 (134)
2013 (118)
2015 (107)
2026 (97)
2025 (92)
2011 (86)
2016 (81)
2012 (75)
2008 (74)
2023 (69)
2024 (67)
2022 (66)
2009 (62)
2021 (54)
2020 (53)
2005 (49)
2007 (42)
2018 (35)
2017 (31)
2019 (26)
2006 (22)
2004 (3)
2003 (3)

UNIPROT ID/AC

CTNA2_MOUSE (3)
CE170_MOUSE (3)
GHC1_MOUSE (3)
ARP10_MOUSE (3)
RAP2B_MOUSE (3)
F126B_MOUSE (3)
AGAP3_MOUSE (3)
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CAN5_MOUSE (3)
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DCLK1_MOUSE (3)
RL18A_MOUSE (3)
EMC1_MOUSE (3)
MTMR5_MOUSE (3)
C170B_MOUSE (3)
ATLA1_MOUSE (3)
DOPD_MOUSE (3)
MAP1S_MOUSE (3)
BCAS3_MOUSE (3)
IRGQ_MOUSE (3)
CSKP_MOUSE (3)
CYLD_MOUSE (3)
ELMO2_MOUSE (3)
MIRO1_MOUSE (3)

CHEBI ID

CHEBI:72998 (6)
CHEBI:4167 (2)
CHEBI:15361 (2)
CHEBI:16905 (2)
CHEBI:87393 (1)
CHEBI:11424 (1)
CHEBI:40116 (1)
CHEBI:41330 (1)
CHEBI:49019 (1)
CHEBI:49017 (1)
CHEBI:28831 (1)
CHEBI:17153 (1)
CHEBI:87426 (1)
CHEBI:86055 (1)
CHEBI:87430 (1)
CHEBI:87510 (1)
CHEBI:88764 (1)
CHEBI:52649 (1)
CHEBI:85403 (1)
CHEBI:28610 (1)
CHEBI:73858 (1)
CHEBI:73851 (1)
CHEBI:74669 (1)
CHEBI:75034 (1)
CHEBI:84811 (1)
CHEBI:86100 (1)
CHEBI:86097 (1)
CHEBI:83717 (1)
CHEBI:79096 (1)
CHEBI:34086 (1)

Metabolite Name

Hypoxanthine (20)
Adenosine (17)
Choline (17)
Xanthine (17)
Taurine (16)
Guanosine (16)
Betaine (15)
Cytosine (15)
Creatine (15)
Uridine (15)
Uracil (14)
Guanine (14)
Cytidine (14)
Inosine (14)
Malic acid (13)
Spermidine (13)
Histamine (13)
Ornithine (13)
Adenine (13)
Creatinine (13)
Methionine (12)
Tryptophan (12)
Serine (12)
Alanine (12)
Phenylalanine (12)
Glycine (12)
Pyroglutamic acid (12)
Trigonelline (11)
Leucine (11)
Thymine (11)

First Public Date

2026 (67)
2025 (53)
2023 (28)
2024 (26)
2014 (15)
2022 (12)
2019 (11)
2021 (9)
2020 (9)
2013 (9)
2018 (7)
2017 (6)
2015 (4)
2016 (2)

Modelling Approach

Ordinary differential equation model (3)
Metabolic network (1)

Lab affiliation

Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
IMSB, ETH Zurich (4)
AstraZeneca (3)
Department of Pharmacy Uppsala University Box 580 SE-751 23 Uppsala, Sweden (2)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Department of Pharmacy, Uppsala University, Uppsala, Sweden (2)
University of Missouri-Columbia (2)
Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 241/27, CZ-77900, Olomouc-Holice, Czech Republic (2)
The University of Sydney (2)
European Molecular Biology Laboratory (2)
Institut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, Paris, France (2)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland (2)
1Center for Medical Genetics, Ghent University Hospital, Ghent, 9000, Belgium 2Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent (1)
Boehringer Ingelheim Pharma GmbH & Co. KG, Drug Discovery Sciences (1)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (1)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (1)
Radboud University Nijmegen (1)
Senior Lecturer Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, (1)
Systems Arbovirology - Leibniz Institute for Experimental Virology (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 albert.sickmann@isas.de www.isas.de twitter.com/isas_Leibniz (1)
Rapid Novor Inc (1)
Netherlands Forensic Institute (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
European Institute of Oncology IRCSS, Department of Experimental Oncology, Milan, Italy (1)
Max Planck Institute of Biophysics, Frankfurt am Main, Germany (1)
Fudan University Shanghai Cancer Center from China (1)
Division of Cardiology, Johns Hopkins University School of Medicine, Baltimore, MD 20205, USA (1)
Department of Molecular Imaging and Therapy, Diabetes and Metabolism Research Institute, Beckman Research Institute of the City of Hope, USA Mass Spectrometry & Proteomics Core Facility, Beckman Research Institute of the City of Hope, USA (1)
CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110025, India Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh 201002, India (1)
Bioanalytical Mass Spectrometry Group Max Planck Institute for Multidisciplinary Sciences Germany Bioanalytics Institute for Clinical Chemistry University Medical Center Goettingen Germany (1)

IsPrivate

False (5)

Submitter Keywords

FROG (1)

Classification

bacteria (18)
protozoa (2)
fungi (1)
viruses (1)

Modification

26.01565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
57.021464 (1)

Study type

Transcription profiling by array (747)
RNA-seq of coding RNA (118)
ChIP-seq (46)
RNA-seq of coding RNA from single cells (25)
Methylation profiling by high throughput sequencing (18)
Comparative genomic hybridization by array (16)
Other (13)
RNA-seq of non coding RNA (12)
Unknown experiment type (10)
Methylation profiling by array (10)
Transcription profiling by tiling array (9)
ChIP-chip by array (9)
Cell line - High-throughput sequencing (7)
DNA-seq (6)
ChIP-chip by tiling array (5)
Transcription profiling by SAGE (3)
Transcription profiling by RT-PCR (3)
ATAC-seq (3)
Single nucleus RNA sequencing (3)
RNA-seq of total RNA (3)
Cell line - One-color microarray (2)
Animal - High-throughput sequencing (2)
RNAi profiling by array (2)
Proteomic profiling by array (2)
Cell line - Single-cell sequencing (1)
Differential (1)
Translation profiling (1)
High-throughput sequencing (1)
Whole chromosome random sequencing (1)
Trajectory (1)

Release Date

2025 (418)
2022 (271)
2023 (261)
2024 (256)
2021 (249)
2020 (223)
2014 (213)
2015 (190)
2013 (172)
2016 (171)
2010 (164)
2019 (151)
2012 (126)
2018 (124)
2017 (121)
2011 (120)
2008 (93)
2009 (81)
2026 (71)
2005 (51)
2007 (50)
2006 (26)
2004 (8)
2003 (3)
2002 (3)
1997 (1)

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Identification of zein proteome by multi-enzyme digestion

Zeins are a class of prolamine proteins extracted from maize, and are extensively used in the food and pharmaceutical industries. Therefore, characterization of its components is essential for quality control and safety evaluation. However, zein proteins have low abundance of the trypsin targets lys...

ORGANISM(S): Zea Mays

2019-07-25 | PXD014743 |

Expression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose

This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...

ORGANISM(S): Ruminococcus flavefaciens FD-1

2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress

Combination of multi-enzyme digestions and C-TAILS approach for deep screening of C-terminome

Protein C-termini study is still a challenging task and far behind its counterpart N-termini study. The identification of C-termini is often hampered by low ionization response in MS and fewer efficient enrichment methods existing. We previously optimized the C-TAILS (C-terminal amine-based isotope ...

ORGANISM(S): Escherichia coli

2017-11-24 | PXD004275 | Pride