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TranscriptomicsChromatin immunoprecipitation of yeast strains BY4716 and RM11-1a to detect H3K4me2 binding sites
Single-nucleosome ChIP-CHIP of H3K4me2 in two unrelated strains of S. cerevisiae (By and RM).
See Nagarajan et al. paper for details.
ORGANISM(S): Saccharomyces cerevisiae 
2014-12-31 | E-MEXP-2217 | biostudies-arrayexpress
TranscriptomicsIntra-species variation of H3K14ac in S. cerevisiae
Quantitative variation of epigenetic marks, such as histone modifications, can modify gene expression and eventually contribute to inter-individual phenotypic variation. Our goal is to investigate natural inter-individual variation of the epigenome in a quantitative manner. To probe the degree of na...
ORGANISM(S): Saccharomyces cerevisiae 
2015-07-22 | E-MTAB-2671 | biostudies-arrayexpress
TranscriptomicsAlterations in the transcriptome and antibiotic susceptibility of Staphylococcus aureus grown in the presence of diclofenac
Diclofenac is a non-steroidal anti-inflammatory drug (NSAID) which has been shown to increase the susceptibility of various bacteria to antimicrobials and demonstrated to have broad antimicrobial activity. This study describes transcriptome alterations in S. aureus strain COL grown with diclofenac ...
ORGANISM(S): Staphylococcus aureus subsp. aureus COL 
2011-07-18 | E-GEOD-30724 | biostudies-arrayexpress
TranscriptomicsChIP-chip by array of yeast strains BY and RM after TSA treatment and recovery using anti-H3K14ac polyclonal antibody to investigate the stability of chromatin acetylation epi-polymorphisms
Strains BY and RM were cultivated with high concentrations of Trichostatin-A (TSA) and then let recover for >20 generations before re-profiling H3K14ac by ChIP as in Nagarajan et al. 2010 PLoS Genetics
ORGANISM(S): Saccharomyces cerevisiae 
2012-09-21 | E-MTAB-1025 | biostudies-arrayexpress
TranscriptomicsNsaRS is a Cell-Envelope-Stress Sensing Two-Component System of Staphylococcus aureus
S. aureus possesses 16 two-component systems (TCS), two of which (GraRS & NsaRS) belong to the intramembrane-sensing histidine kinase (IM-HK) family, conserved within the firmicutes. NsaRS has recently been documented as being important for nisin-resistance in S. aureus. In this study we present a d...
ORGANISM(S): Staphylococcus aureus 
2011-05-16 | E-GEOD-27061 | biostudies-arrayexpress
GenomicsThe complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution
We investigated natural inter-individual variation of the epigenome in a quantitative manner. To probe the degree of natural epigenomic diversity in S. cerevisiae, we compared three unrelated wild strains using replicated Mnase-seq and ChIP-seq profiling at mononucleosomal resolution for five histon...
ORGANISM(S): Saccharomyces cerevisiae S288c 
2015-07-21 | E-MTAB-3390 | biostudies-arrayexpress
UnknownMitochondrial DNA Variability of Domestic River Buffalo (Bubalus bubalis) Populations: Genetic Evidence for Domestication of River Buffalo in Indian Subcontinent.
Not available
S-EPMC4453062 | biostudies-literature
UnknownQuantitative X-ray Absorption and Emission Spectroscopies: Electronic Structure Elucidation of Cu2S and CuS.
Not available
S-EPMC3683299 | biostudies-literature
GenomicsH4K12ac is regulated by estrogen receptor-alpha and is associated with BRD4 function and inducible transcription
Hormone-dependent gene expression requires dynamic and coordinated epigenetic changes. Estrogen receptor-positive (ER+) breast cancer is particularly dependent upon extensive chromatin remodeling and changes in histone modifications for the induction of hormone-responsive gene expression. Our previo...
ORGANISM(S): Homo sapiens 
2015-05-02 | E-GEOD-65886 | biostudies-arrayexpress
ModelsNagarajan2013 - C. ljungdahlii (iHN637)
FROG and miniFROG Reports for the organism C. ljungdahlii. The model (iHN637) originates from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, ...
2024-10-15 | MODEL2406270003 | BioModels
FROG 
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